Sequence
atgc intronic sequence ATGC exonic sequencegtttgttatcttgtttaaaagataaagtatccaagtttgacaattttcgggtttaggccattactgactttgatcttattgtgcagCTTGGAGCATTTTTGGCTGGGGCACTATTAGCAGAAACAAATTTCCGAACACAGATTGAAGCAGATATAAGGCCATTTAGAGGCTTACTTCTTGGGTTAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0282g00020.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: LOC_Os12g42300.1 (Oryza sativa), 3'ss of exon 9
---gtttgttatcttgtttaaaagataaagt-atccaagtttgacaattttcgggtttaggccat-tactgactttgatcttattgtgcagCTTGGAGCATTTTTGGCTGGGGCACTATTAGCAGAAACAAATTTCCGAACACAGATTGAAGCAGATATAAGGCCATTTAGAGGCTTACTTCTTGGGTTAT
| ||| ||| ||| | ||| | || | |||||| || | || | || || | | ||| ||| || | || |||||| |||||||||| | | ||||| ||||||||||| || || |||||||| || ||||||||||| ||||| || || |||||||| |
gtacgtcattaaaacattttgaagtgatagtcacgtttagtttatgattttcctgtctttctgatgtgctcttgttaaacatat-gtgtagTTAGGTGCATTTCTGGCTGGGGCCATTCTTGCAGAGACAAATTTCCGTACCCAAATTGAAGCTGACATAAGGCCATTCAGAGGTTTGCTGCTTGGGTTGT
upper sequence: Vv00s0282g00020.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GRMZM2G009715_T01 (Zea mays), 3'ss of exon 9
gtttgttatcttgtttaaaagataaag---tatccaagtttgacaattttcgggtttaggcc-----attactgactt--tgatcttatt--gtgcagCTTGGAGCATTTTTGGCTGGGGCACTATTAGCAGAAACAAATTTCCGAACACAGATTGAAGCAGATATAAGGCCATTTAGAGGCTTACTTCTTGGGTTAT
|| |||| | ||| ||| | || |||||| || | |||| | ||| || ||| | || | ||| | ||| || || | || |||||| ||||||| || | | ||||||||||||||||| ||||| |||||||| || ||||||||||| || ||||| | |||||| | |
gtatgtt---ctatttgaaaatttcagttatatccagattgtgctcttttagttttttggatttatgattgtttacctcctgacatcattctatgtagTTGGGTGCATTTCTGGCTGGAGCCATTCTTGCAGAAACAAATTTCCGGACACAAATTGAAGCTGACATAAGGCCATTCAGGGGCTTGTTGCTTGGGCTGT
upper sequence: Vv00s0282g00020.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA07G30360.2 (Glycine max), 3'ss of exon 11
-----gtttgttatcttgtttaaaagat---------aaagtatccaagtttgacaattttcgggtttaggccattactgactttgatcttattgtgcagCTTGGAGCATTTTTGGCTGGGGCACTATTAGCAGAAACAAATTTCCGAACACAGATTGAAGCAGATATAAGGCCATTTAGAGGCTTACTTCTTGGGTTAT
|| | || || |||| | | | | | | || || || | | || | || | || |||||||||| || ||||| ||||| ||| | |||||||| ||||| ||| | || |||||||||||||| ||||| |||||||||||||| ||||||||||| |
gttccgtattttccaatgcttaaggatttttaatttgggattgtggagaatcattaaattgaatattaacttgacagttgtgtgaaatatcataatgcagCTTGGGGCTTTTTTAGCTGGAGCAATTTTAGCAGAGACAAACTTCAGGACCCAGATTGAAGCAGACATAAGACCATTTAGAGGCTTGCTTCTTGGGTTGT
upper sequence: Vv00s0282g00020.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA08G06890.3 (Glycine max), 3'ss of exon 10
-----gtttgttatcttgtttaaaagat-------aaagtatccaagtttgacaattttcgggtttaggccattactgactttgatcttattgtgcagCTTGGAGCATTTTTGGCTGGGGCACTATTAGCAGAAACAAATTTCCGAACACAGATTGAAGCAGATATAAGGCCATTTAGAGGCTTACTTCTTGGGTTAT
|| | || || ||| | | | | | | | || || || | | | || | || | || |||||||||| || ||||| ||||| ||| | |||||||| ||||| ||| | || ||||||||||| || ||||| ||||||||||| || ||||||||||| |
gttccgtattttccaatgcttaggattttaatttgggattgtggagaatcattaaattgaatattaacttgacaattgtatgaaatatcataatgcagCTTGGGGCTTTTTTAGCTGGAGCAATTTTAGCAGAGACAAACTTCAGGACCCAGATTGAAGCTGACATAAGACCATTTAGAGGATTGCTTCTTGGGTTGT
upper sequence: Vv00s0282g00020.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT4G04850.2 (Arabidopsis thaliana), 3'ss of exon 10
gtttg--ttatcttgttta-aaagataaagtatccaagtttgacaattttcgggtttaggccattactgactttgatcttattgtgcagCTTGGAGCATTTTTGGCTGGGGCACTATTAGCAGAAACAAATTTCCGAACACAGATTGAAGCAGATATAAGGCCATTTAGAGGCTTACTTCTTGGGTTAT
||| | ||| | || ||| ||| | | |||| | | | | || |||| || | | | || ||| | || |||||||||| ||| | ||||| ||||| ||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| |||||||| || || |
gttagaattaacacccctacaaaaatataatttcca--tctaatatcctt--acttta----atgtcctaactcaattttactctgaagCTTGGAGCTTTTCTTGCTGGAGCACTTCTAGCAGAAACAAATTTCCGAACACAAATTGAAGCTGATATTAGGCCATTTAGAGGTTTACTTCTCGGTTTGT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caagtttgacaattttcgggtttaggccattactgactttgatcttattgtgcagCTTGGAGCATTTTTGGCTGGGGCACTATTAGCAGAAACAAATTTCCGAACACAGATTGAAGCAGATATAAGGCCATTTAGAGGCTTACTTCTTGGGTTAT
tcttatt CT-rich tract
acaatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttgttatcttgtttaaaagataaagtatccaagtttgacaattttcgggtttaggccattactgactttgatcttattgtgcagCTTGGAGCATTTTTGGCTGGGGCACTATTAGCAGAAACAAATTTCCGAACACAGATTGAAGCAGATATAAGGCCATTTAGAGGCTTACTTCTTGGGTTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT