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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtattttatctccaggcaaaacccattttctgttactagtttcttgatatgtatgcatggtttctaatcggaaaaaggggggaaaatgaaatgaaatgtatgcataatttctataaagtttaagaggttctatggacttatgaacaatcagGCTGATTCTTCAAAGGAAGCAACGTCATCCAATGCACAAGACAACACATCAGTTTCAGGGAGGCCTTCTCGCTTTGCACGTTTTGGTTTTGGCTCACAGC

Basic information

species Vitis vinifera
transcript Vv00s0229g00030.t01
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161717991|gb|FC069274.1|FC069274
EST:     TACCTAATAGAAGTGTTTCAGAGCCAGACTTTGGTCGAACTCCAAGACAG                         GCTGATTCTTCAAAGGAAGCAACGTCATCCAATGCACAAGACAACACATCA
genomic: TACCTAATAGAAGTGTTTCAGAGCCAGACTTTGGTCGAACTCCAAGACAGgtcagtattt ... gaacaatcagGCTGATTCTTCAAAGGAAGCAACGTCATCCAATGCACAAGACAACACATCA
EST: gi|33405955|gb|CF211582.1|CF211582
EST:     TACCTAATAGAAGTGTTTCAGAGCCAGACTTTGGTCGAACTCCAAGACAG                         GCTGATTCTTCAAAGGAAGCAACGTCATCCAATGCACAAGACAACACATCA
genomic: TACCTAATAGAAGTGTTTCAGAGCCAGACTTTGGTCGAACTCCAAGACAGgtcagtattt ... gaacaatcagGCTGATTCTTCAAAGGAAGCAACGTCATCCAATGCACAAGACAACACATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtatgcataatttctataaagtttaagaggttctatggacttatgaacaatcagGCTGATTCTTCAAAGGAAGCAACGTCATCCAATGCACAAGACAACACATCAGTTTCAGGGAGGCCTTCTCGCTTTGCACGTTTTGGTTTTGGCTCACAGC
       ataatttctataaagt  TA-rich tract