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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttggagtctaatattttattttgtggcattctgttcattgaactggatactctcatttcctctgttcataccattatttctgagatatgttttcatattttcttctttccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG

Basic information

species Vitis vinifera
transcript Vv00s0225g00130.t01
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30299046|gb|CB975840.1|CB975840
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|32270153|gb|CD719312.1|CD719312
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|110389517|gb|EC954364.1|EC954364
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|29785334|gb|CB342233.2|CB342233
EST:     ATAAGGTTGCATCAATATCACTCAGTCCCAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCATC-CACCTGGAGATATTTCATATCTGCA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTC-CCACACCTGGAGATATTTCATATCTGCA
EST: gi|28960785|gb|CB340400.1|CB340400
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|71877299|gb|DT026354.1|DT026354
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|32247739|gb|CD713558.1|CD713558
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|352769572|gb|FQ468500.1|FQ468500
EST:     GGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCGGGAGATATTTCATATCTGCAA
genomic: GGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|351023682|gb|FQ448233.1|FQ448233
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCACCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|18458318|gb|BM436596.1|BM436596
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|294966650|gb|GW839641.1|GW839641
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|32248182|gb|CD714001.1|CD714001
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|29784204|gb|CB344645.2|CB344645
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGACAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|77581124|gb|DV219488.1|DV219488
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|27580138|gb|CB002833.1|CB002833
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|28958445|gb|CB339217.1|CB339217
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATA-TT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|33409332|gb|CF214959.1|CF214959
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|27579398|gb|CB002093.1|CB002093
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|110690265|gb|EE067211.1|EE067211
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|28960253|gb|CB340127.1|CB340127
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|30325827|gb|CD009089.1|CD009089
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|351037170|gb|FQ457003.1|FQ457003
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCACCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|33409522|gb|CF215149.1|CF215149
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|28962352|gb|CB341385.1|CB341385
EST:     TCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACCCCTGGAGATATTTCATATCTGCAA
genomic: TCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|30251685|gb|CB969418.1|CB969418
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|110377606|gb|EC942684.1|EC942684
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|110361483|gb|EC924957.1|EC924957
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|110378242|gb|EC943362.1|EC943362
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|30299121|gb|CB975915.1|CB975915
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|352772700|gb|FQ472743.1|FQ472743
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|352781103|gb|FQ466416.1|FQ466416
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|18459781|gb|BM438059.1|BM438059
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|351026761|gb|FQ436414.1|FQ436414
EST:     CAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: CAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|110372740|gb|EC936928.1|EC936928
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|26263684|gb|CA814747.1|CA814747
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|110417553|gb|EC983619.1|EC983619
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|32250342|gb|CD716161.1|CD716161
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|26265676|gb|CA816739.1|CA816739
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|33409576|gb|CF215203.1|CF215203
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|349823894|gb|FQ415305.1|FQ415305
EST:     ATAANGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCAT
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCAT
EST: gi|110362940|gb|EC926503.1|EC926503
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|110707090|gb|EE083187.1|EE083187
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGGTCA-TCCTCCCACACCTGGAGAATATT-CATATCTTG
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGG-TCAATCCTCCCACACCTGGAGA-TATTTCATATCT-G
EST: gi|110379655|gb|EC944867.1|EC944867
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|351025435|gb|FQ435127.1|FQ435127
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCACCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|110377565|gb|EC942640.1|EC942640
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|110687378|gb|EE064734.1|EE064734
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|71874055|gb|DT023110.1|DT023110
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|29784845|gb|CB341320.2|CB341320
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|32248822|gb|CD714641.1|CD714641
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|71874947|gb|DT024002.1|DT024002
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|30299262|gb|CB976056.1|CB976056
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
EST: gi|32245345|gb|CD711164.1|CD711164
EST:     ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTT                         TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA
genomic: ATAAGGTTGCATCAATATCACTCAGTCCAAATGTCCCTGGGCAGATATTTgtaagttgga ... ccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttcataccattatttctgagatatgttttcatattttcttctttccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG
                      tatgttttcatatttt  CT-rich tract
                     atatgttttcatattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagttggagtctaatattttattttgtggcattctgttcattgaactggatactctcatttcctctgttcataccattatttctgagatatgttttcatattttcttctttccttttacagTTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT