Sequence
atgc intronic sequence ATGC exonic sequence...ttacacactgaaaactactcattttttgtgctatgttgacattatgttattttgatgctgacaaaactaacaaaaaatttattttatactttcgatgcagAATTTTCTTGAGAAAACTAATGCTACAGATGCATCTGGAAATATTGTATTTGGAGATATTGGTGTACATATTCAACAAGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0199g00220.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA18G21720.1 (Glycine max), 3'ss of exon 11
----------ttacacactgaaa------actactcattttttgtgctatgttgacattatg--ttattttgatgctgacaaaactaacaaaaaatttattttatactttcgatgcagAATTTTCTTGAGAAAACTAATGCTACAGATGCATCTGGAAATATTGTATTTGGAGATATTGGTGTACATATTCAACAAGAG
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gtgatttagttgatataatcaaatatcatattaccaaattagcatgatcacccaaaaacattactgaattttacattcagacatagaaacttgaacttgctaactgattcttttgcagAATTTACTCCAAAAGACTAATGCTACAGATGCATCAGGAAATGTTGTATTTGGAGATATTGGTGTATATATTCAACAAGAG
upper sequence: Vv00s0199g00220.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA08G38450.1 (Glycine max), 3'ss of exon 9
ttacacactgaaaactactcattttttgtgct---atgttgacattatgttattttgatgctgacaaaactaacaaaaaatttattttatactttcgatgcagAATTTTCTTGAGAAAACTAATGCTACAGATGCATCTGGAAATATTGTATTTGGAGATATTGGTGTACATATTCAACAAGAG
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--atcaatatcatattaccaaattagcatgatcacccaaaaacattactgaattttactttcagacatagaaacttgaa-cttgctaactgattcttttgcagAATTTACTCCAAAAGACTAATGCTACAGATGCATCAGGAAATGTTGTATTTGGAGACATTGGCGTATATATTCAACAAGAG
upper sequence: Vv00s0199g00220.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA01G03040.1 (Glycine max), 3'ss of exon 10
----------------------------------------------------------------------------------------ttacacactgaaaactactcattttttgtgctatgtt----gacattatgttattttgatgctga---caaaactaacaaaaaat--ttattttatactttcgatgcagAATTTTCTTGAGAAAACTAATGCTACAGATGCATCTGGAAATATTGTATTTGGAGATATTGGTGTACATATTCAACAAGAG
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gtgatataaattatgtaattattttcacaaataataaatccacaacacttgcactattaaagttctgctctcatggtatgtcaatcagtaaaaaaatgagcagtgctatttttttaatttatttatttgaagattgctacattctgacatagaattagaaatttatacttgttaactgatatgtcttcttgatgcagAATTTGCTTCAAAAAACTAATGCTACTGATAATTCTGGAAACACTGTATTTCGAGATATTGGTGTATATACCCAACAAGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttattttgatgctgacaaaactaacaaaaaatttattttatactttcgatgcagAATTTTCTTGAGAAAACTAATGCTACAGATGCATCTGGAAATATTGTATTTGGAGATATTGGTGTACATATTCAACAAGAG
aactaac putative branch site (score: 1)
tactttc putative PPT
tgacaaaactaacaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttacacactgaaaactactcattttttgtgctatgttgacattatgttattttgatgctgacaaaactaacaaaaaatttattttatactttcgatgcagAATTTTCTTGAGAAAACTAATGCTACAGATGCATCTGGAAATATTGTATTTGGAGATATTGGTGTACATATTCAACAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
-tacacac
- - - - - aaaacta
- - - - - - - - - - - - tttgtgc
- - - - - - - - - - - - - - - - -tgttgac
- - - - - - - - - - - - - - - - - - - - - - - - - - tgatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaaa