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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgcttttagagtgatttaacccttcttcttccatttcaattcccccatctttttcatcaaatgtgggtgaaatcattttttatccccaattcttgatgatcaaacttcactttcatccgacacttcacattttcaatggttcccaattgcagGAGGGTTGCTAAAGCATCATCTTGAAGCTTCCTTGAATCACATAAAAGCTTGAAGTGATCAGGAAAAGCATTTGTTCACAGCCATTTCGTGATTTTTCAA

Basic information

species Vitis vinifera
transcript Vv00s0194g00260.t01
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352768757|gb|FQ467969.1|FQ467969
EST:     ACCAAGGCAGATGAGAACAAAAAGATTAGAAACACAGACTCTTCCAAAAG                         GAGGGTTGCTAAAGCATCATCTTGAAGCTTCCTTGAATCACATAAAAGCTT
genomic: ACCAAGGCAGATGAGAACAAAAAGATTAGAAACACAGACTCTTCCAAAAGgtaatgcttt ... ccaattgcagGAGGGTTGCTAAAGCATCATCTTGAAGCTTCCTTGAATCACATAAAAGCTT
EST: gi|352764534|gb|FQ472891.1|FQ472891
EST:     ACCAAGGCAGATGAGAACAAAAAGATTAGAAACACAGACTCTTCCAAAAG                         GAGGGTTGCTAAAGCATCATCTTGAAGCTTCCTTGAATCACATAAAAGCTT
genomic: ACCAAGGCAGATGAGAACAAAAAGATTAGAAACACAGACTCTTCCAAAAGgtaatgcttt ... ccaattgcagGAGGGTTGCTAAAGCATCATCTTGAAGCTTCCTTGAATCACATAAAAGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatcaaacttcactttcatccgacacttcacattttcaatggttcccaattgcagGAGGGTTGCTAAAGCATCATCTTGAAGCTTCCTTGAATCACATAAAAGCTTGAAGTGATCAGGAAAAGCATTTGTTCACAGCCATTTCGTGATTTTTCAA
                                          ttccc  CT-rich tract
 attttcaat  TA-rich tract