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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtggtgttgtgtgttataatgttgttttttgctgaactatggatatgacttttgttaaaggtttcttttaattcttctttccacaacctcagATGATCAAATTTATCCAATCCACTCAATTTATTAACAAGGACTTGCATATGTACCATGTTGAAACCAATACCCCTGCACTGGCACGGACTTCCAATCTGA

Basic information

species Vitis vinifera
transcript Vv00s0189g00030.t01
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0189g00030.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GRMZM2G326677_T01 (Zea mays), 3'ss of exon 15
gtaggtggtgttgtgtgttataatgttgttttttgctgaacta-tggatatgacttttgttaaaggtttcttttaattcttctttccacaacctcagATGATCAAATTTATCCAATCCACTCAATTTATTAACAAGGACTTGCATATGTACCATGTTGAAACCAATACCCCTGCACTGGCACGGACTTCCAATCTGA-----------------
       || || ||| | |   ||||  |||  | ||| |||    || |      | ||| ||    ||| |  ||| | |  |  |     |||||||||||||| || || | ||| ||||| ||||| || ||  | ||||||||||||| ||| |  || ||||||||  ||||||||||||| ||||| |                 
-------gtattttgt-tcaacttgtttatttaggatgacctaacctatgttcgggctattagag----cttatgtttcctttggctgc-----cagatgatcaaattcatacagTGCACACAATTCATTAATAACGATCTTCATATGTACCATGCTGAGAGTAACACCCCTGCTTTGGCACGGACTTCTAATCTTAATGAGGAGCTTGGACAG

upper sequence: Vv00s0189g00030.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA18G16990.1 (Glycine max), 3'ss of exon 4
gtaggtggtgttgtgtgttataatgttgttttttgctg--aactatggatatgacttttgttaaaggtttcttttaattcttctttccacaacctcagATGATCAAATTTATCCAATCCACTCAATTTATTAACAAGGACTTGCATATGTACCATGTTGAAACCAATACCCCTGCACTGGCACGGACTTCCAATCTGA
       || |||||| | |     || ||| |  |    || |    || | |   || | ||  |    | | | || || |    |      |||||||| |||||||| || || ||||||||||| ||||||||||||   |||||||||  |||||||||||| |||||| ||||  | ||||| |||||||
-------gt-ttgtgtctcactcatttatttataccctataaatgccaatgtcatgattataaagagaaaatgtaatttattttggttattgtaccagATGATAAAATTTATTCAGTCAACTCAATTTATCAACAAGGACTTGTGCATGTACCATAATGAAACCAATACACCTGCATTGGCCAGAACTTCAAATCTGA

upper sequence: Vv00s0189g00030.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA08G40530.1 (Glycine max), 3'ss of exon 12
gtaggtggtgttgtgtgttataatgttgttttttgctgaactatggatatgacttttgttaaaggtttcttttaattcttctttccacaacctcagATGATCAAATTTATCCAATCCACTCAATTTATTAACAAGGACTTGCATATGTACCATGTTGAAACCAATACCCCTGCACTGGCACGGACTTCCAATCTGA
    ||     | | | | ||    || |    |    ||      || | |   || | ||  |    | | | || || |    |      |||||||| |||||||| || || ||||||||||| ||||||||||||   |||||||||  |||||||||||| |||||| ||||  | ||||| |||||||
----gtttatctctctctcatttatttatgccctataaaa--gccaatgtcatgattataaagagaaaatgtaatttattttggttattttaccagATGATTAAATTTATTCAGTCAACTCAATTTATAAACAAGGACTTGTGCATGTACCATAATGAAACCAATACACCTGCATTGGCCAGAACTTCAAATCTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatggatatgacttttgttaaaggtttcttttaattcttctttccacaacctcagATGATCAAATTTATCCAATCCACTCAATTTATTAACAAGGACTTGCATATGTACCATGTTGAAACCAATACCCCTGCACTGGCACGGACTTCCAATCTGA
                            ttttaat  putative branch site (score: 3)
                        tttcttttaattcttc  CT-rich tract
                        tttcttttaattctt  TA-rich tract