Sequence
atgc intronic sequence ATGC exonic sequence...taggctctggtgttttttctgtatgattgttcgtgaaattattcccttcttagcttctacagattactaatgttaatgttgcttgccgtttgatattcagGGTGTTGATTTCTATGCAATAAATACAGACTCTCAAGCTCTATTACACTCTGCGGCTTCGAACCCTCTCCAAATTGGAGAACTTTTGACTCGTGGACTAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0090g01320.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA18G10030.1 (Glycine max), 3'ss of exon 1
-taggctctggtgttttttctgtatgattgttcgtgaaattattcccttcttagcttctacagattactaatgttaatgttgcttgccgtttgat-attcagGGTGTTGATTTCTATGCAATAAATACAGACTCTCAAGCTCTATTACACTCTGCGGCTTCGAACCCTCTCCAAATTGGAGAACTTTTGACTCGTGGACTAG
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gaggggtctatcatagttacaaattgg--attcaataaggtatactttatatttttgttaatgttgtattgtattgtgctttattattattttttcaatcagGGTGTAGAATTTTATGCTATAAATACTGATGCTCAAGCACTGTTGCATTCTGCTGCTGAGAACCCTATCAAAATTGGAGAGCTTCTGACTCGTGGATTAG
upper sequence: Vv19s0090g01320.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G46530.1 (Glycine max), 3'ss of exon 1
taggctctggtgttttttctgtatgattgttcgtgaaattattcccttcttagcttctacagattactaatgttaatgttgcttgccgtttgatattca----gGGTGTTGATTTCTATGCAATAAATACAGACTCTCAAGCTCTATTACACTCTGCGGCTTCGAACCCTCTCCAAATTGGAGAACTTTTGACTCGTGGACTAG
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--gcacctaaagaaatgcatcta--gtttttcacctttgtgttttgctgccaccaagtgaataatgctgattatattgtcgaattctgctgcattttcaatcagGGTGTAGACTTCTATGCAATAAATACCGATGCTCAGGCACTGTTAAATTCTGCTGCTGAGAACCCTATTAAAATTGGAGAAGTTCTGACTCGTGGATTAG
upper sequence: Vv19s0090g01320.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA14G02110.1 (Glycine max), 3'ss of exon 1
taggctctggtgttttttctgtatgattgttcgtgaaattattcccttcttagcttctacagattactaatgttaatgttgcttgccgtttgatat---tcagGGTGTTGATTTCTATGCAATAAATACAGACTCTCAAGCTCTATTACACTCTGCGGCTTCGAACCCTCTCCAAATTGGAGAACTTTTGACTCGTGGACTAG
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taaagaaatgcatctagttttt-cgcctttgtgttttgctgccaccgagtgaa-taatgcagat-gttattgttgaattctgctgcattttcatttcaatcagGGTGTAGACTTCTATGCGATAAATACCGATGCTCAGGCACTATTAAATTCTGCTGCTGAGAACCCTATTAAAATTGGAGAAGTTCTGACTCGTGGATTAG
upper sequence: Vv19s0090g01320.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT5G55280.1 (Arabidopsis thaliana), 3'ss of exon 1
---------taggctctggtgttttttctgtatgattgttcgtgaaattattcccttcttagcttct-acagattactaatgttaatgttgcttgccgtttgatattcagGGTGTTGATTTCTATGCAATAAATACAGACTCTCAAGCTCTATTACACTCTGCGGCTTCGAACCCTCTCCAAATTGGAGAACTTTTGACTCGTGGACTAG
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gtcacatttctcaatctctttctctctacgaagaagaaaacctggaacttttctcattttgggttttgattgattaatggtttgaattctcct----gtgt----tccagAGTGTTGATTTCTATGCGATAAACACGGATTCGCAAGCTCTGTTACAGTCTTCTGCTGAGAACCCACTTCAAATTGGAGAACTTTTAACTCGTGGGCTTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71857956|gb|DT007011.1|DT007011EST: GTGGTGGGGGCAACAATGCCGTTAATCGGATGATTGGAAGCGGATTACAG GGTGTTGATTTCTATGCAATAAATACAGACTCTCAAGCTCTATTACACTCT
genomic: GTGGTGGGGGCAACAATGCCGTTAATCGGATGATTGGAAGCGGATTACAGgtggaatttg ... tgatattcagGGTGTTGATTTCTATGCAATAAATACAGACTCTCAAGCTCTATTACACTCT
EST:
gi|71865724|gb|DT014779.1|DT014779EST: GTGGTGGGGGCAACAATGCCGTTAATCGGATGATTGGAAGCGGATTACAG GGTGTTGATTTCTATGCAATAAATACAGACTCTCAAGCTCTATTACACTCT
genomic: GTGGTGGGGGCAACAATGCCGTTAATCGGATGATTGGAAGCGGATTACAGgtggaatttg ... tgatattcagGGTGTTGATTTCTATGCAATAAATACAGACTCTCAAGCTCTATTACACTCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttcttagcttctacagattactaatgttaatgttgcttgccgtttgatattcagGGTGTTGATTTCTATGCAATAAATACAGACTCTCAAGCTCTATTACACTCTGCGGCTTCGAACCCTCTCCAAATTGGAGAACTTTTGACTCGTGGACTAG
attactaatgttaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taggctctggtgttttttctgtatgattgttcgtgaaattattcccttcttagcttctacagattactaatgttaatgttgcttgccgtttgatattcagGGTGTTGATTTCTATGCAATAAATACAGACTCTCAAGCTCTATTACACTCTGCGGCTTCGAACCCTCTCCAAATTGGAGAACTTTTGACTCGTGGACTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - ctggtgt
- - - - - - - - - ctgtatg
- - - - - - - - - - - - - - - - - gaaatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgccg