1 5' 3' | 2 5' 3' | 3 5' 3' |
...atgtactgtgctttgacagattgatgtgctacatacatatttattttgctatttgttttttctggtattccctaatgcttttgtgtttttttctctatagATGGAAGAATCCAAGGAATTTGTGGCCCATTCTGCTACATATTCATCTCAACGGTTGCAATCAACCTTTGGTTCTCCAACTGAAAGCCGTGGGCCCCAAC
species | Vitis vinifera |
transcript | Vv19s0090g01270.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
ttgctatttgttttttctggtattccctaatgcttttgtgtttttttctctatagATGGAAGAATCCAAGGAATTTGTGGCCCATTCTGCTACATATTCATCTCAACGGTTGCAATCAACCTTTGGTTCTCCAACTGAAAGCCGTGGGCCCCAAC
ccctaat putative branch site (score: 3)
tgcttttgtgtttttt CT-rich tract
ttttgtgttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtactgtgctttgacagattgatgtgctacatacatatttattttgctatttgttttttctggtattccctaatgcttttgtgtttttttctctatagATGGAAGAATCCAAGGAATTTGTGGCCCATTCTGCTACATATTCATCTCAACGGTTGCAATCAACCTTTGGTTCTCCAACTGAAAGCCGTGGGCCCCAAC
- - - - tgctttg
- - - - - - - - - - -tgatgtg
- - - - - - - - - - - - - - - acataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tccctaa