Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|352785667|gb|FQ475670.1|FQ475670EST: AATCCTCATCTTCGCATTTCTCTTTCTACTATCATTCTCTTCACCTTCAG AGGGAGGTGGTTCAGTTGCAGTCAACTATGGGCGCATTGCGAATGATCTCC
genomic: AATCCTCATCTTCGCATTTCTCTTTCTACTATCATTCTCTTCACCTTCAGgtttagtttc ... ccttttgcagAGGGAGGTGGTTCAGTTGCAGTCAACTATGGGCGCATTGCGAATGATCTCC
EST:
gi|161707487|gb|FC057726.1|FC057726EST: AATCCTCATCTTCGCATTTCTCTTCCTACTATCATTCTCTTCACCTTCAG AGGGAGGTGGTTCAGTTGCAGTCAACTATGGGCGCATTGCGAATGATCTCC
genomic: AATCCTCATCTTCGCATTTCTCTTTCTACTATCATTCTCTTCACCTTCAGgtttagtttc ... ccttttgcagAGGGAGGTGGTTCAGTTGCAGTCAACTATGGGCGCATTGCGAATGATCTCC
EST:
gi|352782698|gb|FQ476778.1|FQ476778EST: AATCCTCATCTTCGCATTTCTCTTTCTACTATCATTCTCTTCACCTTCAG AGGGAGGTGGTTCAGTTGCAGTCAACTATGGGCGCATTGCGAATGATCTCC
genomic: AATCCTCATCTTCGCATTTCTCTTTCTACTATCATTCTCTTCACCTTCAGgtttagtttc ... ccttttgcagAGGGAGGTGGTTCAGTTGCAGTCAACTATGGGCGCATTGCGAATGATCTCC
EST:
gi|110725576|gb|EE102233.1|EE102233EST: AATCCTCATCTTCGCATTTCTCTTTCTACTATCATTCTCTTCACCTTCAG AGGGAGGTGGTTCAGTTGCAGTCAACTATGGGCGCATTGCGAATGATCTCC
genomic: AATCCTCATCTTCGCATTTCTCTTTCTACTATCATTCTCTTCACCTTCAGgtttagtttc ... ccttttgcagAGGGAGGTGGTTCAGTTGCAGTCAACTATGGGCGCATTGCGAATGATCTCC
EST:
gi|352790930|gb|FQ477378.1|FQ477378EST: AATCCTCATCTTCGCATTTCTCTTTCTACTATCATTCTCTTCACCTTCAG AGGGAGGTGGTTCAGTTGCAGTCAACTATGGGCGCATTGCGAATGATCTCC
genomic: AATCCTCATCTTCGCATTTCTCTTTCTACTATCATTCTCTTCACCTTCAGgtttagtttc ... ccttttgcagAGGGAGGTGGTTCAGTTGCAGTCAACTATGGGCGCATTGCGAATGATCTCC
EST:
gi|110688021|gb|EE066093.1|EE066093EST: CTACTATCATTCTCTTCACCTTCAG AGGGAGGTGGTTCAGTTGCAGTCAACTATGGGCGCATTGCGAATGATCTCC
genomic: CTACTATCATTCTCTTCACCTTCAGgtttagtttc ... ccttttgcagAGGGAGGTGGTTCAGTTGCAGTCAACTATGGGCGCATTGCGAATGATCTCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctctctgtttctttctgtttttttttgtttgtatttaatgatttgccttttgcagAGGGAGGTGGTTCAGTTGCAGTCAACTATGGGCGCATTGCGAATGATCTCCCACAACCAGCCCAAGTGGTGGAGCTTCTCAAGGCACAAGGGATCAATAA
atttaat putative branch site (score: 4)
tttgcctttt putative PPT
tgtttttttttgtttg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttagtttcgaccttcaactctctctctgtttctttctgtttttttttgtttgtatttaatgatttgccttttgcagAGGGAGGTGGTTCAGTTGCAGTCAACTATGGGCGCATTGCGAATGATCTCCCACAACCAGCCCAAGTGGTGGAGCTTCTCAAGGCACAAGGGATCAATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT