1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttagagaaagaaaatttggatagaaatcatttagggttttctgaaatttgtgggggtgattgacgatttttcttgtctttctccggctctcaacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG
species | Vitis vinifera |
transcript | Vv19s0090g00420.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGGTTTCAAAGGAGTAGGCTACGCTTCAG ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGTEST: gi|110413107|gb|EC978880.1|EC978880
genomic: AGGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: GTTTCAAAGGAGTAGGCTACGCTTCAG ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGTEST: gi|110394027|gb|EC958394.1|EC958394
genomic: GTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: AAGGAGTAGGCTACGCTTCAG ACCCGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGTEST: gi|110399308|gb|EC965807.1|EC965807
genomic: AAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: GGTTTCAAAGGAGTAGGCTACGCTTCAG ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGTEST: gi|34548008|gb|CF516240.1|CF516240
genomic: GGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAG ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGTEST: gi|110732012|gb|EE106936.1|EE106936
genomic: CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAG ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGTEST: gi|26262514|gb|CA813577.1|CA813577
genomic: CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: CAAAGGTTT-AAAGGAGTAGGCTACGCTTCAG ACCAGCTTTCATTGCCCGTATNTCTAGTTTTCATCCAGCAAAGTACATGGTEST: gi|32268526|gb|CD717685.1|CD717685
genomic: CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: GGTTTCAAAGGAGTAGGCTACGCTTCAG ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGTEST: gi|30125889|gb|CB911228.1|CB911228
genomic: GGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: GGCTACGCTTCAG ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGTEST: gi|32270786|gb|CD719945.1|CD719945
genomic: GGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: GGTTTCAAAGGAGTAGGCTACGCTTCAG ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGTEST: gi|110714445|gb|EE091358.1|EE091358
genomic: GGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: AAGGTTTCAAAGGAGTAGGCTACGCTTCAG ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGTEST: gi|33408556|gb|CF214183.1|CF214183
genomic: AAGGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: AAGGTTTCAAAGGAGTAGGCTACGCTTCAG ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGTEST: gi|110394877|gb|EC960261.1|EC960261
genomic: AAGGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: AAAGGAGTAGGCTACGCTTCAG ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGTEST: gi|34549846|gb|CF518078.1|CF518078
genomic: AAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAG ACCAGCTTTGATTTNCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGEST: gi|29783601|gb|CB349899.2|CB349899
genomic: CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCA-TTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGG
EST: CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAG ACCTGATTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGTEST: gi|352782608|gb|FQ476688.1|FQ476688
genomic: CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAG ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGTEST: gi|110714735|gb|EE091984.1|EE091984
genomic: CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: TTCAAAGGAGTAGGCTACGCTTCAG ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGTEST: gi|110376519|gb|EC941583.1|EC941583
genomic: TTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: TTCAAAGGAGTAGGCTACGCTTCAG ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGTEST: gi|26262469|gb|CA813532.1|CA813532
genomic: TTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: CAAAGG-TTCAAAGGAGTAGGCTACGCTTCAG ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGTEST: gi|110394740|gb|EC960022.1|EC960022
genomic: CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: TTCAAAGGAGTAGGCTACGCTTCAG ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGTEST: gi|351016410|gb|FQ423837.1|FQ423837
genomic: TTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAG ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGTEST: gi|110409750|gb|EC975420.1|EC975420
genomic: CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: TTCAAAGGAGTAGGCTACGCTTCAG ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGTEST: gi|110400162|gb|EC966709.1|EC966709
genomic: TTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: TCAAAGGAGTAGGCTACGCTTCAG ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGTEST: gi|110383355|gb|EC947723.1|EC947723
genomic: TCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAG ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGTEST: gi|33408126|gb|CF213753.1|CF213753
genomic: CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAG ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGTEST: gi|34546868|gb|CF515100.1|CF515100
genomic: CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: AAGGTTTCAAAGGAGTAGGCTACGCTTCAG ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGTEST: gi|110408810|gb|EC974453.1|EC974453
genomic: AAGGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: TTCAAAGGAGTAGGCTACGCTTCAG ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGTEST: gi|110391267|gb|EC956231.1|EC956231
genomic: TTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: TTCAAAGGAGTAGGCTACGCTTCAG ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGTEST: gi|110404591|gb|EC969891.1|EC969891
genomic: TTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: AAGGAGTAGGCTACGCTTCAG ACCATCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGTEST: gi|34546689|gb|CF514921.1|CF514921
genomic: AAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAG ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGTEST: gi|110362224|gb|EC925742.1|EC925742
genomic: CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: AGGCTACGCTTCAG ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGTEST: gi|110703159|gb|EE079771.1|EE079771
genomic: AGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: CAAAGGTTTCAAAGGAGTAAGCTACGCTTCAG ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGTEST: gi|110411871|gb|EC977598.1|EC977598
genomic: CAAAGGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: TTCAAAGGAGTAGGCTACGCTTCAG ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGTEST: gi|30322834|gb|CD006096.1|CD006096
genomic: TTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: GGTTTCAAAGGAGTAGGCTACGCTTCAG ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGTEST: gi|110399261|gb|EC965758.1|EC965758
genomic: GGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: TCAAAGGAGTAAGCTACGCTTCAG ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGTEST: gi|110398077|gb|EC964179.1|EC964179
genomic: TCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: TCAAAGGAGTAGGCTACGCTTCAG ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGTEST: gi|34320204|gb|CF372958.1|CF372958
genomic: TCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
EST: AAGGTTTCAAAGGAGTAGGCTACGCTTCAG ACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
genomic: AAGGTTTCAAAGGAGTAGGCTACGCTTCAGgtaacaaata ... caacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGT
atttgtgggggtgattgacgatttttcttgtctttctccggctctcaacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG
gattgac putative branch site (score: 3)
tttttcttgtctttct putative PPT
atttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagagaaagaaaatttggatagaaatcatttagggttttctgaaatttgtgggggtgattgacgatttttcttgtctttctccggctctcaacgaacagACCAGCTTTCATTGCCCGTATTTCTAGTTTTCATCCAGCAAAGTACATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - -aagaaaa
- - - - - - - - tggatag
- - - - - - - - - - - -aaatcat
- - - - - - - - - - - - - - - - - - - - - - - - -gtggggg