Sequence
atgc intronic sequence ATGC exonic sequence...agcgaacttctttaatataaacgtcaggatgcatctcctaagcagtgttcttgatgtttatgatacactgtattaacattcggtgctcgaacctttccagGTATTGGGTAGTGGTTTTGAGGTGATATCTGTTGGAAAGCGAAAGCTTGTTAGGTCTGTCCCTACAGAGTTGAACAAAGACCATAATTCAATTCTAGAGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0090g00110.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA18G11630.1 (Glycine max), 3'ss of exon 3
agcga-acttctttaatataaacgtcaggatgcatctcctaagcagtgttcttgatgtttatgatacactgtattaacattcggtgctcgaacctttccagGTATTGGGTAGTGGTTTTGAGGTGATATCTGTTGGAAAGCGAAAGCTTGTTAGGTCTGTCCCTACAGAGTTGAACAAAGACCATAATTCAATTCTAGAGC-
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agtattacattttccttttgttcatctttgttctccacttgagaaatttgttacatgtgtcc--ttgttcatactgatgtgtaagtgtaactaaatttcaggTGCTGGGTAGTGGTTTTGAAGTTATTTCTGTTGGAAAGAAAAAACTTGTTCGTTCAGTTCCAACTGAGTTGAACAAAGACCACAATGAGATTCTAGAACT
upper sequence: Vv19s0090g00110.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G42650.1 (Glycine max), 3'ss of exon 3
------agcgaacttctttaatataaacgtcaggatgcatctcctaagcagtgttcttgatgtttatgatacactgtattaacattcggtgctcgaacctttccagGTATTGGGTAGTGGTTTTGAGGTGATATCTGTTGGAAAGCGAAAGCTTGTTAGGTCTGTCCCTACAGAGTTGAACAAAGACCATAATTCAATTCTAGAGC
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attccttttgttcatctttgtttctccactagagaaatttgttacatgtgtccttcttgaaccttttggtgtttcatactgatctttaa--ctaaa----tttcagGTGCTGGGTAGTGGTTTTGAAGTTATTTCTGTTGGAAAGAAAAAACTTGTTCGTTCAGTTCCAACCGAGTTAAACAAAGACCACAATGAAATTCTAGAAC
upper sequence: Vv19s0090g00110.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT4G27040.3 (Arabidopsis thaliana), 3'ss of exon 6
agcgaacttctttaatataaacgtcaggatgcatctcctaagcagtgttcttgatgtttatgatacactgtattaacattcggtgctcgaacctttc----cagGTATTGGGTAGTGGTTTTGAGGTGATATCTGTTGGAAAGCGAAAGCTTGTTAGGTCTGTCCCTACAGAGTTGAACAAAGACCATAATTCAATTCTAGAGC
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-----gtttctatctaacttgtgtttttcttttttctttcagatttttaatcaatgggaaaattttgaactgttcttgctggtatcttgggattttctcctcagGTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTCCGTTCAGTACCCACAGAGCTGAACAAAGACCATAACCAGATTTTGGAGT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgttcttgatgtttatgatacactgtattaacattcggtgctcgaacctttccagGTATTGGGTAGTGGTTTTGAGGTGATATCTGTTGGAAAGCGAAAGCTTGTTAGGTCTGTCCCTACAGAGTTGAACAAAGACCATAATTCAATTCTAGAGC
tattaac putative branch site (score: 1)
cctttcc putative PPT
tattaacatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agcgaacttctttaatataaacgtcaggatgcatctcctaagcagtgttcttgatgtttatgatacactgtattaacattcggtgctcgaacctttccagGTATTGGGTAGTGGTTTTGAGGTGATATCTGTTGGAAAGCGAAAGCTTGTTAGGTCTGTCCCTACAGAGTTGAACAAAGACCATAATTCAATTCTAGAGC
- - - - - - -aatataaa
- - - - - - - - - - - - caggatg
- - - - - - - - - - - - - - - -catctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cactgta