Sequence
atgc intronic sequence ATGC exonic sequencegtctctctttctctctctctttctgtgtgtgtgcgtgtgtgtgtgtgtgtgactgacagtggctttaaaatcaattgcagGCTTGCAGAGATGTGGAAAGAGTTGCAGATTGAGATGGATTAACTACTTGAGACCAGAACTCAAGAGGGGTTCTTTTTCTGCACAAGAAGAACAGAGTAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0085g00940.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA15G41810.1 (Glycine max), 3'ss of exon 1
-------------------gtctctctttctctctctctttctgtgtgtgtgcgtgtgtgtgtgtgtgtgactgacagtg-gctttaaaatcaattgcagGCTTGCAGAGATGTGGAAAGAGTTGCAGATTGAGATGGATTAACTACTTGAGACCAGAACTCAAGAGGGGTTCTTTTTCTGCACAAGAAGAACAGAGTAT
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tgatggagaccactgccatatagtagttactggatcatataataatttcttgtatgtgattgaaaaaatgaaagatgttgtggtttttttttatgtgcagGCTTGCAAAGATGTGGGAAGAGTTGCAGGTTGAGATGGATTAATTATCTGAGGCCAGATCTGAAGAGGGGTTCCTTCACTGCTGAAGAAGAGCAGATCAT
upper sequence: Vv19s0085g00940.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G17370.1 (Glycine max), 3'ss of exon 1
---------------------gtctctctttctctctctctttctgtgtgtgtgcgtgtgtgtgtgtgtgtgactgaca--gtggctttaaaatcaattgcagGCTTGCAGAGATGTGGAAAGAGTTGCAGATTGAGATGGATTAACTACTTGAGACCAGAACTCAAGAGGGGTTCTTTTTCTGCACAAGAAGAACAGAGTAT
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attgattgaaatcatgattatataatagttcctgatcatatattaataatttcttgtgtgatagaacaaataaaagatgatgtggttttttaatg---tgcagGCTTGCAAAGATGTGGGAAGAGTTGCAGGTTGAGATGGATTAATTATCTGCGGCCAGATCTGAAGAGGGGTTCCTTCACTGCTGAAGAAGAGCAGATCAT
upper sequence: Vv19s0085g00940.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT3G12720.1 (Arabidopsis thaliana), 3'ss of exon 1
--------------------------------------------------------------------------------------------------------------------gtctctctttctctctctctttctgtgtgtgtgcgtgtgtgtgtgtgtgtgactgacagtggctttaaaatcaattgcagGCTTGCAGAGATGTGGAAAGAGTTGCAGATTGAGATGGATTAACTACTTGAGACCAGAACTCAAGAGGGGTTCTTTTTCTGCACAAGAAGAACAGAGTAT
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gttttgtatcttctatctctacttcccttttctttttactattttttgttcatgagtctaaacatacaacatgtgaaaaaataatagtctttcaattcaaaactaattagcaatgagtgaattagcctatgttttttatatactatatgctcg-atgtggattaatc-ctaacagtatctatatgtgtg--tatagGGTTGCAGAGATGTGGGAAGAGTTGCAGATTAAGGTGGATAAACTATCTAAGGCCTGATCTGAGGAGAGGTTCGTTTAATGAGGAAGAAGAGCAGATTATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161706041|gb|FC054934.1|FC054934EST: CATCACTGCCCACGGCCATGGCAGTTGGAGTTCTGTTCCAAA-CTTGCAG GCTTGCAGAGATGTGGAAAGAGTTGCAGATTGAGATGGATTAACTACTTGA
genomic: CATCACTGCCCACGGCCATGGCAGTTGGAGTTCTGTTCCAAAACTTGCAGgtctctcttt ... tcaattgcagGCTTGCAGAGATGTGGAAAGAGTTGCAGATTGAGATGGATTAACTACTTGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtgtgtgcgtgtgtgtgtgtgtgtgactgacagtggctttaaaatcaattgcagGCTTGCAGAGATGTGGAAAGAGTTGCAGATTGAGATGGATTAACTACTTGAGACCAGAACTCAAGAGGGGTTCTTTTTCTGCACAAGAAGAACAGAGTAT
gactgac putative branch site (score: 2)
tttaaaatcaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtctctctttctctctctctttctgtgtgtgtgcgtgtgtgtgtgtgtgtgactgacagtggctttaaaatcaattgcagGCTTGCAGAGATGTGGAAAGAGTTGCAGATTGAGATGGATTAACTACTTGAGACCAGAACTCAAGAGGGGTTCTTTTTCTGCACAAGAAGAACAGAGTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
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