Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtttttgtttctttcctgactttctatggattcatttcttggaatatatttttacttgttctaatttatgaaactgatgattctgaattgtcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG

Basic information

species Vitis vinifera
transcript Vv19s0085g00370.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0085g00370.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os06g45710.1 (Oryza sativa), 3'ss of exon 2
-------gtttttgtttct-ttcctgactttctatggattcatttcttggaatatatttttacttgttctaatttatgaaactgatgattctgaattgtcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG
            ||||||| | | ||   |  | |   |||    |      | | ||||  ||||| ||   || | |  |     |||     ||||| ||||||||| |||||||| ||||| || || |||||||||||||| |||||||| ||  |  ||||||| |||||||| ||||| 
agcagctaaccgtgtttctatgcttgggataatgttctttcgcccccctt--tttgttttctcttgtcctctgttgtaatgcaatcaatt-----ttgtc-ttttcagGGTCGCCCAAAAGGTGTAACCCCGAAGTACAGCTTGAAGCCTCTTGTTCCGCGCTTGTCTGAGCTTCTTGGTGTTGAT

upper sequence: Vv19s0085g00370.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os02g07260.1 (Oryza sativa), 3'ss of exon 2
gtttt-tgtttctttcctgactttctatggattcatttcttggaatatatttttacttgttctaatttatgaaactgatgattctgaattgtcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG
||  |  ||    |     |      |||||||  |         ||   | |||  ||||    || ||   |   |||||||    ||||    | ||||| || || |||||||| || || |||||||||||||| |||||||| ||| |  ||||||| || |||||||| || 
gtggtgcgtactgtgaacaaaacagaatggattactaatcaactgtaagctcttaactgttgcttttcattctaac-atgattcacttttgtaacctccagGGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCACGCTTGTCTGAGCTACTTGGAGTCGAT

upper sequence: Vv19s0085g00370.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G382914_T02 (Zea mays), 3'ss of exon 2
gtttttgtttctttcctgactttctatggattcatttcttggaatatatttttacttgttctaatttatgaaactgatgattctgaattgtcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG
  |  |  |         || || | ||| || | |      |  ||| ||||   | || || |||   ||       |||      || | ||||||||| || ||||| ||||| || || |||||||||||||| |||||||| ||| |  ||||||| || ||||||||||| 
actaatagtaacaagtcaaccttttttgggttgagtgtagcaacaataattttttgtcttttatttttgtaataatgcaatttgttgatgccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCACGCTTGTCTGAGCTCCTTGGAGTTGAA

upper sequence: Vv19s0085g00370.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA15G41550.1 (Glycine max), 3'ss of exon 2
-----gtttttgtttctttcctgactttctatggattcatttcttggaatatatttttacttgttctaatttatgaaactgat--gattctgaat-tgtcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG
     |||  | ||  | |  | |    | ||| ||         | ||  | |  | | | ||  | | ||   ||| ||||       ||| | ||  |||||||||| || ||||| ||||| |||||||| ||||| ||||| ||||||||||||||||||||| ||||||||||| |||||
gaggagttactattattctattaaga--ccatgaatgt-----cagaaaagtgtggtgagtagtagtgacttg-aaaagtgattttgccttgactatgctgttttcagGGACGTCCAAAAGGTGTAACACCTAAATACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTTGGAATTGAG

upper sequence: Vv19s0085g00370.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G17600.1 (Glycine max), 3'ss of exon 2
gtttttgtttctttcctgactttctatggattcatttcttggaatatatttttacttgttctaatttatgaaactgatgattctgaattgt--cgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG
 ||||| |||   |  ||  |||   || |||  ||   | || | |  ||| | | ||| | | ||   |||  | |    ||  | | |   |||||||||| || || || ||||| |||||||| ||||| ||||| ||||||||||||||||||||| ||||||| ||| |||||
ttttttatttaacttttgcttttgggtgtattagtta--tagagtgtgatttgagtggttgtgacttgaaaaatggttttgccttgactatgctgttttcagGGACGTCCTAAAGGTGTAACACCTAAATACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAG

upper sequence: Vv19s0085g00370.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT1G79550.1 (Arabidopsis thaliana), 3'ss of exon 1
gtttttgtttctttcctgactttctatggattcatttct--tggaatatattt---ttacttgttctaatttatgaaactgatgattctgaattgtcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG
    |  ||  |||  | | |||   |||||   ||| |  |  | |  | ||   | |     |  |||| ||| |  |      ||| ||||   |||| ||||| |||||||| |||||||| |||||||||||||| || ||||||||||| ||  |||||||||||||||| ||||||
----taattgttttagtaagtttacttggatatgtttatactcaagttcaattggatgatgctgttgaattaatggatgtatctgatctcaatttatgttt-cagGGCCGCCCAAAAGGTGTTACTCCTAAGTACAGCTTAAAGCCTCTTGTGCCCAGATTGTCTGAACTTCTTGGTGTTGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87586006|gb|DY474492.1|DY474492
EST:     AGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTT                         GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
genomic: AGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTgtatgatccg ... tcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
EST: gi|110699307|gb|EE076201.1|EE076201
EST:     TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTT                         GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
genomic: TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTgtatgatccg ... tcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
EST: gi|110397873|gb|EC963830.1|EC963830
EST:     TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTT                         GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
genomic: TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTgtatgatccg ... tcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
EST: gi|30304283|gb|CB981077.1|CB981077
EST:     TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCTACCTT                         GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
genomic: TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTgtatgatccg ... tcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
EST: gi|161715115|gb|FC062745.1|FC062745
EST:     TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTT                         GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
genomic: TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTgtatgatccg ... tcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
EST: gi|161711155|gb|FC061161.1|FC061161
EST:     TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTT                         GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
genomic: TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTgtatgatccg ... tcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
EST: gi|110720497|gb|EE096481.1|EE096481
EST:     TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTT                         GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
genomic: TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTgtatgatccg ... tcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
EST: gi|110686232|gb|EE063649.1|EE063649
EST:     TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTT                         GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
genomic: TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTgtatgatccg ... tcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
EST: gi|110724013|gb|EE099467.1|EE099467
EST:     TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTT                         GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
genomic: TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTgtatgatccg ... tcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
EST: gi|30301262|gb|CB978056.1|CB978056
EST:     TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTT                         GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
genomic: TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTgtatgatccg ... tcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
EST: gi|161719810|gb|FC066106.1|FC066106
EST:     TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTT                         GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
genomic: TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTgtatgatccg ... tcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
EST: gi|71870341|gb|DT019396.1|DT019396
EST:     TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTT                         GGGCGCCCAAAGGGTGTTACACCTAAGTATAGCTTGAAACCTCTTGTGCCA
genomic: TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTgtatgatccg ... tcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
EST: gi|110708833|gb|EE086826.1|EE086826
EST:     TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTT                         GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
genomic: TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTgtatgatccg ... tcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
EST: gi|161712835|gb|FC062358.1|FC062358
EST:     TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTT                         GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
genomic: TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTgtatgatccg ... tcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
EST: gi|71864715|gb|DT013770.1|DT013770
EST:     TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTT                         GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
genomic: TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTgtatgatccg ... tcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
EST: gi|110691483|gb|EE069633.1|EE069633
EST:     TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTT                         GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
genomic: TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTgtatgatccg ... tcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
EST: gi|110685462|gb|EE062201.1|EE062201
EST:     TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTT                         GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
genomic: TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTgtatgatccg ... tcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
EST: gi|110733067|gb|EE108902.1|EE108902
EST:     TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTT                         GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
genomic: TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTgtatgatccg ... tcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
EST: gi|110701769|gb|EE079717.1|EE079717
EST:     TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTT                         GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
genomic: TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTgtatgatccg ... tcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
EST: gi|161717730|gb|FC064716.1|FC064716
EST:     TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTT                         GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
genomic: TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTgtatgatccg ... tcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
EST: gi|30304082|gb|CB980876.1|CB980876
EST:     TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCTACCTT                         GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
genomic: TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTgtatgatccg ... tcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
EST: gi|110703074|gb|EE079602.1|EE079602
EST:     TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTT                         GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
genomic: TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTgtatgatccg ... tcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
EST: gi|161707911|gb|FC056957.1|FC056957
EST:     TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTT                         GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
genomic: TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTgtatgatccg ... tcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
EST: gi|71860708|gb|DT009763.1|DT009763
EST:     TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTT                         GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
genomic: TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTgtatgatccg ... tcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
EST: gi|110703546|gb|EE080487.1|EE080487
EST:     TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTT                         GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
genomic: TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTgtatgatccg ... tcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
EST: gi|110685734|gb|EE062711.1|EE062711
EST:     TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTT                         GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
genomic: TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTgtatgatccg ... tcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
EST: gi|71872705|gb|DT021760.1|DT021760
EST:     TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTT                         GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
genomic: TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTgtatgatccg ... tcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
EST: gi|110387417|gb|EC952080.1|EC952080
EST:     TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTT                         GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
genomic: TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTgtatgatccg ... tcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
EST: gi|30304016|gb|CB980810.1|CB980810
EST:     TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCTACCTT                         GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
genomic: TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTgtatgatccg ... tcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
EST: gi|110685755|gb|EE062752.1|EE062752
EST:     TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTT                         GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
genomic: TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTgtatgatccg ... tcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
EST: gi|161714658|gb|FC063893.1|FC063893
EST:     TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTT                         GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
genomic: TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTgtatgatccg ... tcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
EST: gi|71874095|gb|DT023150.1|DT023150
EST:     TGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTT                         GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
genomic: TGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTgtatgatccg ... tcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
EST: gi|110371427|gb|EC935445.1|EC935445
EST:     TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTT                         GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
genomic: TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTgtatgatccg ... tcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
EST: gi|110359104|gb|EC920037.1|EC920037
EST:     TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTT                         GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
genomic: TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTgtatgatccg ... tcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
EST: gi|71859896|gb|DT008951.1|DT008951
EST:     TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTT                         GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
genomic: TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTgtatgatccg ... tcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
EST: gi|110699045|gb|EE077239.1|EE077239
EST:     TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTT                         GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
genomic: TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTgtatgatccg ... tcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
EST: gi|110688519|gb|EE067167.1|EE067167
EST:     TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTT                         GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
genomic: TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTgtatgatccg ... tcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
EST: gi|110709509|gb|EE085032.1|EE085032
EST:     TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTT                         GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
genomic: TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTgtatgatccg ... tcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
EST: gi|30130997|gb|CB916336.1|CB916336
EST:     TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTT                         GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
genomic: TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTgtatgatccg ... tcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
EST: gi|110372594|gb|EC936775.1|EC936775
EST:     TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTT                         GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
genomic: TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTgtatgatccg ... tcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
EST: gi|33406655|gb|CF212282.1|CF212282
EST:     TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTT                         GGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA
genomic: TCAAGTACTTGATGGGTCATGGCGCTAAAGTCATCCTCGCCAGCCACCTTgtatgatccg ... tcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatttttacttgttctaatttatgaaactgatgattctgaattgtcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG
                                             tcgttttc  CT-rich tract
             ttctaatttatgaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttttgtttctttcctgactttctatggattcatttcttggaatatatttttacttgttctaatttatgaaactgatgattctgaattgtcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - ttcctga
- - - - - - - - - - - -ctatgga
- - - - - - - - - - - - - - - - - -ttcttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaactga