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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattccccaattcagtaaatgatattctattttattttattctccttttctttgtctttgtggttaagtaatcatttccaaaattgatatccttaggaaaataaagcatgctgaaaattgaccttgttgacattcttaatgtctgatttgggttccctgaatgtttaatttaaacactttgtatgcagTTCTCAAAGGGCCAGCTTGGGGTCAAGTTCAAGCCATTTTCAAAG

Basic information

species Vitis vinifera
transcript Vv19s0027g01480.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0027g01480.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G078756_T01 (Zea mays), 3'ss of exon 6
gtaattccccaattcagtaaatgatattctattttattttattctccttttctttgtctttgtggttaagtaatcatttccaaaattgatatccttaggaaaataaagcatgctgaaaattgaccttgttgacattcttaatgtctgatttgggttccctgaatgtttaatttaaacactttgtatgcagTTCTCAAAGGGCCAGCTTGGGGTCAAGTTCAAGCCATTTTCAAAG
                                                                         |  ||  | ||  |  |||    | || |     |||||||      || | | |||   |||     |     | ||  ||| |    |  || | || |  |      ||  ||||||||| | ||| ||||||| ||||||||||||||||||||||||
-------------------------------------------------------------------------tgtttatctaacatagtattaccaagagat----gcatgct------tgtcttggtttgtatttactctcagcaactttagtttctaagacattca-ttcatgc------tacccagTTCTCAGAAGGCAAGCTTGGTGTCAAGTTCAAGCCATTTTCAAAG

upper sequence: Vv19s0027g01480.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AC211349.4_FGT001 (Zea mays), 3'ss of exon 6
gtaattccccaattcagtaaatgatattctattttattttattctccttttctttgtctttgtggttaagtaatcatttccaaaattgatatccttaggaaaataaagcatgctgaaaattgaccttgttgacattc-ttaatgtctgatttgggttccctgaatgtttaatttaaacact--ttgtatgcagTTCTCAAAGGGCCAGCTTGGGGTCAAGTTCAAGCCATTTTCAAAG
                                                                                              ||     || | || ||    || | |  || |||| |  ||  ||  | | |  | |  |   | | | | | |||   |  |  |  || ||  ||||||||| | ||| ||||||| ||||||||||||||||||||||||
---------------------------------------------------------------------------------------------gttgatccaacatagtattaacaagagttgccatgttcatcttggtttgtatttactctcagcaacattagtttctaagacattcgttcattttacccagTTCTCAGAAGGCAAGCTTGGTGTCAAGTTCAAGCCATTTTCAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttaatgtctgatttgggttccctgaatgtttaatttaaacactttgtatgcagTTCTCAAAGGGCCAGCTTGGGGTCAAGTTCAAGCCATTTTCAAAG
                          aatgtttaatttaaac  TA-rich tract