Sequence
atgc intronic sequence ATGC exonic sequence...gttattctattctgaatatttggtaaaattagaattcatgtactgaacctttttcaagttcttttggttggcttgatatatttggttgtggggtttgtagATGTGGTGAGGGATGATCCTACAAACAATGTCCCGGATGCAATTTTGTCGAAACTTGGAATGCAGCTTCACAGGAGGGATCAACACCCAATTGGAATTCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0027g01380.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G10060.1 (Glycine max), 3'ss of exon 1
--gttattctattctgaatatttggtaaaattagaattcatgtactgaacctttttcaagttcttttggttggcttgatatatttggttgtggggtttgtagATGTGGTGAGGGATGATCCTACAAACAATGTCCCGGATGCAATTTTGTCGAAACTTGGAATGCAGCTTCACAGGAGGGATCAACACCCAATTGGAATTCT
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atgcctttacatttgtggtgctgctttatgctaatgttttggttgaaaaatgttctttggtttataaaatt--cttataatttctgattcgtggtgttatagATGTGGTGAGGGATGATCCGGCAAACAATGTGCCAGACAATATATTTTCAAAACTTGGAGTGCAGCTTCACCGGAGGGATCAACACCCTCTTGGGATACT
upper sequence: Vv19s0027g01380.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA18G52890.1 (Glycine max), 3'ss of exon 2
---gttattctattctgaatatttggtaaaattagaattcatgtactgaacctttttcaagttcttttggttggcttgatatatttggttgtggggtttgtagATGTGGTGAGGGATGATCCTACAAACAATGTCCCGGATGCAATTTTGTCGAAACTTGGAATGCAGCTTCACAGGAGGGATCAACACCCAATTGGAATTCT
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tatgcctttacatttgtggtgctgctttatgctaatgttttggttgaaaaatgttctttggtttataaaatt--cttataatttctgattcgtggtgttataGATGTGGTGAGGGATGATCCAACAAATAATGTGCCAGACAATATATTTTCAAAACTTGGAGTGCATCTTCACAGGAGGGATCAACACCCTCTTGGGATAC- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aacctttttcaagttcttttggttggcttgatatatttggttgtggggtttgtagATGTGGTGAGGGATGATCCTACAAACAATGTCCCGGATGCAATTTTGTCGAAACTTGGAATGCAGCTTCACAGGAGGGATCAACACCCAATTGGAATTCT
gcttgat putative branch site (score: 5)
ttgatatattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttattctattctgaatatttggtaaaattagaattcatgtactgaacctttttcaagttcttttggttggcttgatatatttggttgtggggtttgtagATGTGGTGAGGGATGATCCTACAAACAATGTCCCGGATGCAATTTTGTCGAAACTTGGAATGCAGCTTCACAGGAGGGATCAACACCCAATTGGAATTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT