Sequence
atgc intronic sequence ATGC exonic sequence...gagcatagtcacgtagacctcagtatatcattgatcaatcaaaggtgattcagaacctgtaaaaatgtttgagagaactattaatttgataaacaatcagATAATTAACTATCGATATGATCCGTCTGAAAAGTGGTTGGTTTTGATTGGAATTGCTCCGGGTTCACCTGAGAGACCACAGCTTGTCAAAGGGAATATGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0027g01340.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA11G35460.1 (Glycine max), 3'ss of exon 4
--------------------------------------------------------------------------------gagcatagtcac--gtagacctcagtatatcattgatcaatcaaaggtgattcagaacctgtaaaaatgtttgagagaactattaatttgataaacaatcagATAATTAACTATCGATATGATCCGTCTGAAAAGTGGTTGGTTTTGATTGGAATTGCTCCGGGTTCACCTGAGAGACCACAGCTTGTCAAAGGGAATATGC
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gtaagacaatgataaactgcaattctgcttaactacatggttttgtgctgttttccagtttatgcattgctgttcagtgttattttgctcatcagtatatttgtctgtgctatatgtaacttgtagGTGACTCTGAACCTGTAAAGATGTTTGAGAGAACAGCGAATTTGGCAAACAACCAAATAATTAATTATAGATGTGATCCTTCTGAAAAATGGTTGGTCTT--------------------------------------------------------
upper sequence: Vv19s0027g01340.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA18G02960.1 (Glycine max), 3'ss of exon 4
--------------------------------------------------------------------------------gagcatagtcac--gtagacctcagtatatcattgatcaatcaaaggtgattcagaacctgtaaaaatgtttgagagaactattaatttgataaacaatcagATAATTAACTATCGATATGATCCGTCTGAAAAGTGGTTGGTTTTGATTGGAATTGCTCCGGGTTCACCTGAGAGACCACAGCTTGTCAAAGGGAATATGC
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gtaagacaatgataaacttcaattctgcttaactacatggttttgtgccgttttccagtttttgcactgctgttcagtgttattttgctaatcggtatatttgtctgtgatatatgtaacttgtagGTGACTCTGAACCTGTAAAGATGTTTGAGAGAACAGCAAATTTGGCAAACAATCAAATAATTAATTATAGATGTGATCCTTCTGAGAAATGGTTGGTCTT--------------------------------------------------------
upper sequence: Vv19s0027g01340.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 4
------------------------------------------------------------------------------------------gagcatagtcacgtagacctcagtatatcattgatcaa--tcaaaggtgattcagaacctgtaaaaatgtttgagagaactattaatttgataaacaatcagATAATTAACTATCGATATGATCCGTCTGAAAAGTGGTTGGTTTTGATTGGAATTGCTCCGGGTTCACCTGAGAGACCACAGCTTGTCAAAGGGAATATGC
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gtaagatgataatttgcttaactaaatatttttgtgttatactatattttccagtttacgtattctttatgcagtgtgcttgtggtttctgcaaattgttgactggtacatggttcatgatctatataacttgtagGTGACTCTGAACCTGTTAAGATGTTTGAGAGAACAGCAAATTTGGCAAACAACCAGATAATTAATTATCGATGTGACCCTACAGAAAAATGGTTGGTTTT--------------------------------------------------------
upper sequence: Vv19s0027g01340.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G42560.1 (Glycine max), 3'ss of exon 4
----------------------------------------------------------------------------------------gagcatagtcacgtagacctcagtatatcattgatc--aatcaaaggtgattcagaacctgtaaaaatgtttgagagaactattaatttgataaacaatcagATAATTAACTATCGATATGATCCGTCTGAAAAGTGGTTGGTTTTGATTGGAATTGCTCCGGGTTCACCTGAGAGACCACAGCTTGTCAAAGGGAATATGC
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gtaagatgataatttgctcaactaaatatttttgtgttatactatattttccagttcacatattctttacagtgtgcttgtagtttctgcaaattgttgactggtacatggttcatgatctatataacttgtagGTGACTCTGAACCTGTTAAGATGTTTGAGAGAACAGCAAATTTGGCAAACAACCAGATAATTAATTATCGATGTGACCCTACAGAAAAATGGTTGGTCTT-------------------------------------------------------- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgattcagaacctgtaaaaatgtttgagagaactattaatttgataaacaatcagATAATTAACTATCGATATGATCCGTCTGAAAAGTGGTTGGTTTTGATTGGAATTGCTCCGGGTTCACCTGAGAGACCACAGCTTGTCAAAGGGAATATGC
aactattaatttgata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gagcatagtcacgtagacctcagtatatcattgatcaatcaaaggtgattcagaacctgtaaaaatgtttgagagaactattaatttgataaacaatcagATAATTAACTATCGATATGATCCGTCTGAAAAGTGGTTGGTTTTGATTGGAATTGCTCCGGGTTCACCTGAGAGACCACAGCTTGTCAAAGGGAATATGC
gagcata
- - - - - - - -gacctca
- - - - - - - - - - - - - - - - - - aatcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - cagaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agagaac