Sequence
atgc intronic sequence ATGC exonic sequence...ggtaagtggattgcattcttaatttgatattcctggcatgttgacctgatatatcctctattcttgatctttattgagaatatttaccacgtttctgcagGTCAAGTTTACAGTTGAGGAGCTTCGTAGGATTATGGACTACAAGCATAACATTCGTAATATGTCTGTTATTGCTCATGTTGATCATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0027g00760.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G18110.2 (Glycine max), 3'ss of exon 2
ggtaagtggattgcattcttaatttgatattcctggcatgttgacctgatatatcctctattcttgatctttattgagaatatttaccacgtttctgcagGTCAAGTTTACAGTTGAGGAGCTTCGTAGGATTATGGACTACAAGCATAACATTCGTAATATGTCTGTTATTGCTCATGTTGATCATG------------
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-gtaagtcaatgaagag--tgatgcatgatttgtgtttatttactttggctgattgtttat----gatctgaattggga---tttgtc-tacttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAATATCCGTAATATGTCTGTCATTGCTCATGTTGATCACGGTATGGATTTAA
upper sequence: Vv19s0027g00760.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G18110.1 (Glycine max), 3'ss of exon 2
ggtaagtggattgcattcttaatttgatattcctggcatgttgacctgatatatcctctattcttgatctttattgagaatatttaccacgtttctgcagGTCAAGTTTACAGTTGAGGAGCTTCGTAGGATTATGGACTACAAGCATAACATTCGTAATATGTCTGTTATTGCTCATGTTGATCATG
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-gtaagtcaatgaagag--tgatgcatgatttgtgtttatttactttggctgattgtttat----gatctgaattggga---tttgtc-tacttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAATATCCGTAATATGTCTGTCATTGCTCATGTTGATCACG
upper sequence: Vv19s0027g00760.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA15G40860.1 (Glycine max), 3'ss of exon 2
ggtaagtggattgcattcttaatttgatattcctggcatgttgacctgatatatcctctattcttgatctttattgagaatatttaccacgtttctgcagGTCAAGTTTACAGTTGAGGAGCTTCGTAGGATTATGGACTACAAGCATAACATTCGTAATATGTCTGTTATTGCTCATGTTGATCATG
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-gtaagtcgatggagagtgatacatgatttttat------ttatttcctttggttgaatgttcatgctctgaattgaga----tttctctatttttgcagGTGAAGTTCACAGCTGAAGAGCTGCGTCGCATTATGGACTATAAGCATAATATCCGTAATATGTCTGTCATTGCCCATGTTGATCACG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctgatatatcctctattcttgatctttattgagaatatttaccacgtttctgcagGTCAAGTTTACAGTTGAGGAGCTTCGTAGGATTATGGACTACAAGCATAACATTCGTAATATGTCTGTTATTGCTCATGTTGATCATG
tcttgat putative branch site (score: 4)
cgtttct putative PPT
tttattgagaatattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggtaagtggattgcattcttaatttgatattcctggcatgttgacctgatatatcctctattcttgatctttattgagaatatttaccacgtttctgcagGTCAAGTTTACAGTTGAGGAGCTTCGTAGGATTATGGACTACAAGCATAACATTCGTAATATGTCTGTTATTGCTCATGTTGATCATG
- - - - - - gcattct
- - - - - - - - - - - - - - - - - -gcatgtt
- - - - - - - - - - - - - - - - - - - - - - cctgata