Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtctttctctacctcccttcccctatatatctctcagtgtttagtcatgattcaagttagggtttttcttgttcgtttgttttgttttttttttttttttttcatgtggtttaggttttagggtttggtgaactttgaatgttacgctgagtgattctcttgatgtggattagATAAGAAGGTCTTTCCGAACTTTTATATACTTGGATGGTACTCCACCGGAAGTGATGCCCAAGAATCAGATATGCATATTCATAAAGCT

Basic information

species Vitis vinifera
transcript Vv19s0015g01950.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0015g01950.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA04G12890.1 (Glycine max), 3'ss of exon 1
gttagtctttctctacctcccttcccctatatatctctcagtgtttagtcatgattcaagttagggtttttcttgttcgtttgttttgttttttttttttttttttcatgtggtttaggttttagggtttggtgaactttgaatgttacgctgagtgattctcttgatgtggattagATAAGAAGGTCTTTCCGAACTTTTATATACTTGGATGGTACTCCACCGGAAGTGATGCCCAAGAATCAGATATGCATATTCATAAAGCT
                                                              ||  || || || |   | | |     || |||| ||| ||          |||| ||||  ||   || |||  ||| | ||  |       ||||| | ||  | |   | |||||||||||| || ||| |||| |||||||| || ||||| || || || ||||||||  | |||||||| ||||||||||| ||||||
--------------------------------------------------------------agcattatttttttctctctatcaaaattgttttatttattc--------atttaagtttctggaggtgttga--ttttattggaa-----gctgatttttttttttttcttcagATAAGAAGGTGTTCCCGCACTTCTATATACTGGGGTGGTATTCGACTGGGAGTGATGCAGAGGAATCAGACATGCATATTCACAAAGCT

upper sequence: Vv19s0015g01950.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA06G47850.1 (Glycine max), 3'ss of exon 1
gttagtctttctctacctcccttcccctatatatctctcagtgtttagtcatgattcaagttagggtttttcttgttcgtttgttttgttttttttttttttttttcatgtggtttaggttttagggtttggtgaactttgaatgttacgctgagtgattctcttgatgtggattagATAAGAAGGTCTTTCCGAACTTTTATATACTTGGATGGTACTCCACCGGAAGTGATGCCCAAGAATCAGATATGCATATTCATAAAGCT
                                                            | ||  |||||  | |      ||| |||||  ||| ||              |||| ||||| ||   || |||  ||   ||   | | ||| |  || | ||  |     | |||||||||||| || ||| |||| || ||||| || ||||| || || || ||||||||  | |||||||||||||||||||| ||||||
------------------------------------------------------------taagcattttttctctctcaaagttgtgtttcatttattc------------atttaagtttttggaggtgttgatttt---attggaagatgatttgtttttttccttct--tcagATAAGAAGGTGTTCCCGCACTTCTACATACTGGGCTGGTATTCGACTGGGAGTGATGCAGAGGAATCAGATATGCATATTCACAAAGCT

upper sequence: Vv19s0015g01950.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT5G56280.1 (Arabidopsis thaliana), 3'ss of exon 1
gttagtctttctctacctcccttcccctatatatctctcagtgtttagtcatgattcaagttagggtttttcttgttcgtttgttttgttttttttttttttttttcatgtggtttaggttttagggtttggtgaactttgaatgttacgctgagtgattctcttgatgtggattagATAAGAAGGTCTTTCCGAACTTTTATATACTTGGATGGTACTCCACCGGAAGTGATGCCCAAGAATCAGATATGCATATTCATAAAGCT
                                                                              ||  | |     |   | ||||| || |||  |  |   | |   |  ||    | || ||||||  ||   |||        | ||  |||  ||||||||||||||| || ||  | || ||||| || ||||||||||| || |||||||||||  | ||||| ||||||||||| |||||||||
------------------------------------------------------------------------------gtaagctaaagctcactctttttattctcaactatt---gatgcaatcgtaaattaaagtttgaacttttatctgg-------ttttattgtttattagATAAGAAGGTGTTCCCTGATTTCTATATTCTGGGATGGTACTCTACGGGAAGTGATGCTGAGGAATCTGATATGCATATCCATAAAGCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71855098|gb|DT004153.1|DT004153
EST:     ATCTACTCATTCTCTCGACAGATCCTTCCTTGAGAAGAAGCAAGAGCTCT                         ATAAGAAGGTCTTTCCGAACTTTTATATACTTGGATGGTACTCCACCGGAA
genomic: ATCTACTCATTCTCTCGACAGATCCTTCCTTGAGAAGAAGCAAGAGCTCTgttagtcttt ... tgtggattagATAAGAAGGTCTTTCCGAACTTTTATATACTTGGATGGTACTCCACCGGAA
EST: gi|26261888|gb|CA812951.1|CA812951
EST:     ATCTACTCATTCTCTCGACAGATCCTTCCTTGAGAAGAAGCAAGAGCTCT                         ATAAGAAGGTCTTTCCGAACTTTTATATACTTGGATGGTACTCCACCGGAA
genomic: ATCTACTCATTCTCTCGACAGATCCTTCCTTGAGAAGAAGCAAGAGCTCTgttagtcttt ... tgtggattagATAAGAAGGTCTTTCCGAACTTTTATATACTTGGATGGTACTCCACCGGAA
EST: gi|71856758|gb|DT005813.1|DT005813
EST:     ATCTACTCATTCTCTCGACAGATCCTTCCTTGAGAAGAAGCAAGAGCTCT                         ATAAGAAGGTCTTTCCGAACTTTTATATACTTGGATGGTACTCCACCGGAA
genomic: ATCTACTCATTCTCTCGACAGATCCTTCCTTGAGAAGAAGCAAGAGCTCTgttagtcttt ... tgtggattagATAAGAAGGTCTTTCCGAACTTTTATATACTTGGATGGTACTCCACCGGAA
EST: gi|110368023|gb|EC931983.1|EC931983
EST:     ATCTACTCATTCTCTCGACAGATCCTTCCTTGAGAAGAAGCAAGAGCTCT                         ATAAGAAGGTCTTTCCGAACTTTTATATACTTGGATGGTACTCCACCGGAA
genomic: ATCTACTCATTCTCTCGACAGATCCTTCCTTGAGAAGAAGCAAGAGCTCTgttagtcttt ... tgtggattagATAAGAAGGTCTTTCCGAACTTTTATATACTTGGATGGTACTCCACCGGAA
EST: gi|110404227|gb|EC968960.1|EC968960
EST:     ATCTACTCATTCTCTCGACAGATCCTTCCTTGAGAAGAAGCAAGAGCTCT                         ATAAGAAGGTCTTTCCGAACTTTTATATACTTGGATGGTACTCCACCGGAA
genomic: ATCTACTCATTCTCTCGACAGATCCTTCCTTGAGAAGAAGCAAGAGCTCTgttagtcttt ... tgtggattagATAAGAAGGTCTTTCCGAACTTTTATATACTTGGATGGTACTCCACCGGAA
EST: gi|349818410|gb|FQ409185.1|FQ409185
EST:     GTCTACTCATTCTCTCGACAGATCCTTCCTTGAGAAGAAGCAAGAGCTCT                         ATAAGAAGGTCTTTCCGAACTTTTATATACTTGGATGGTACTCCACCGGAA
genomic: ATCTACTCATTCTCTCGACAGATCCTTCCTTGAGAAGAAGCAAGAGCTCTgttagtcttt ... tgtggattagATAAGAAGGTCTTTCCGAACTTTTATATACTTGGATGGTACTCCACCGGAA
EST: gi|110684768|gb|EE062427.1|EE062427
EST:     ATCTACTCATTCTCTCGACAGATCCTTCCTTGAGAAGAAGCAAGAGCTCT                         ATAAGAAGGTCTTTCCGAACTTTTATATACTTGGATGGTACTCCACCGGAA
genomic: ATCTACTCATTCTCTCGACAGATCCTTCCTTGAGAAGAAGCAAGAGCTCTgttagtcttt ... tgtggattagATAAGAAGGTCTTTCCGAACTTTTATATACTTGGATGGTACTCCACCGGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagggtttggtgaactttgaatgttacgctgagtgattctcttgatgtggattagATAAGAAGGTCTTTCCGAACTTTTATATACTTGGATGGTACTCCACCGGAAGTGATGCCCAAGAATCAGATATGCATATTCATAAAGCT
                                       tcttgat  putative branch site (score: 4)
               tttgaat  TA-rich tract