1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttgatttgtcctggttgtgaatgcttgtattggggaagtgcattatgttcagtgagctttatatatatgtttttaattcttaataccgactgtcttgcagGACATTCAATGATCAGATGCCCCAGTTATCTTTCATGCATATTTTTGGCCGACGAGCAAAAGCCCCGGGCGCTATTATTATTGATG
species | Vitis vinifera |
transcript | Vv19s0015g01740.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GATTCACTTGTTTTCGCCGAGACCCATTTGCAGATGGGCTACCCTCTTCT GACATTCAATGATCAGATGCCCCAGTTATCTTTCATGCATATTTTTGGCCGEST: gi|110698503|gb|EE076073.1|EE076073
genomic: GATTCACTTGTTTTCGCCGAGACCCATTTGCAGATGGGCTACCCTCTTCTgtgagtcccc ... tgtcttgcagGACATTCAATGATCAGATGCCCCAGTTATCTTTCATGCATATTTTTGGCCG
EST: GATTCACTTGTTTTCGCCGAGACCCATTTGCAGATGGGCTACCCTCTTCT GACATTCAATGATCAGATGCCCCAGTTATCTTTCATGCATATTTTTGGCCG
genomic: GATTCACTTGTTTTCGCCGAGACCCATTTGCAGATGGGCTACCCTCTTCTgtgagtcccc ... tgtcttgcagGACATTCAATGATCAGATGCCCCAGTTATCTTTCATGCATATTTTTGGCCG
tgttcagtgagctttatatatatgtttttaattcttaataccgactgtcttgcagGACATTCAATGATCAGATGCCCCAGTTATCTTTCATGCATATTTTTGGCCGACGAGCAAAAGCCCCGGGCGCTATTATTATTGATG
tcttaat putative branch site (score: 3)
ctgtctt putative PPT
agctttatatatatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgatttgtcctggttgtgaatgcttgtattggggaagtgcattatgttcagtgagctttatatatatgtttttaattcttaataccgactgtcttgcagGACATTCAATGATCAGATGCCCCAGTTATCTTTCATGCATATTTTTGGCCGACGAGCAAAAGCCCCGGGCGCTATTATTATTGATG
- - - - -cctggtt
- - - - - - - - - gaatgct
- - - - - - - - - - - - - - - - - - -gtgcatt