Sequence
atgc intronic sequence ATGC exonic sequence...tattttctatgtcatccaaactaacaaaaaggtgtgttagcatctcagtttgtgacttaatttgaattcttgtggctaaaatgttttagtgtgtgttcagTTGGTTGGAACTGTGATTGCTTCAAGCATCTACTTTGGGACAGCATGGTGGCTTCTTACAAGTGTGGAGTATATCTGCGATCCAGCCTTGCTTCCAGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0015g00880.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA14G01610.1 (Glycine max), 3'ss of exon 8
--------------------------------------tattttcta-------tgtcatccaaactaacaaaaaggtgtgttagc-atctcagtttgtgacttaatttga-attcttgtggctaaaatgttttagtgt-gtgttcagTTGGTTGGAACTGTGATTGCTTCAAGCATCTACTTTGGGACAGCATGGTGGCTTCTTACAAGTGTGGAGTATATCTGCGATCCAGCCTTGCTTCCAGAAG
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gtaggtataggatatgataggatgtaaatgcatgcaaatatggtctaaaacaactttttttttaatcgctgagaaatcaaaatggcgatctttttccataaaaaaggtgatcagacaaataaataaatattgttaatttcgtgttcagTTGGTAGGTACCATAGTGGCTTCAGGTGTGTACTTTGGCACAGCATGGTGGCTTCTGACAAGTATTCCACACATATGTGATGAAACAAGCTTGCCAGCTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cagtttgtgacttaatttgaattcttgtggctaaaatgttttagtgtgtgttcagTTGGTTGGAACTGTGATTGCTTCAAGCATCTACTTTGGGACAGCATGGTGGCTTCTTACAAGTGTGGAGTATATCTGCGATCCAGCCTTGCTTCCAGAAG
ggctaaa putative branch site (score: 3)
ttaatttgaattctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tattttctatgtcatccaaactaacaaaaaggtgtgttagcatctcagtttgtgacttaatttgaattcttgtggctaaaatgttttagtgtgtgttcagTTGGTTGGAACTGTGATTGCTTCAAGCATCTACTTTGGGACAGCATGGTGGCTTCTTACAAGTGTGGAGTATATCTGCGATCCAGCCTTGCTTCCAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - -tcatcca
- - - - - - - - - - - aacaaaa
- - - - - - - - - - - - - - - - - - - - catctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaaatg