Sequence
atgc intronic sequence ATGC exonic sequence...ttgctgattatttgtttgttgaacagataaatgctgtcaatggtttaactcagcatttctcaaagattttgtttgttgattgtgttgctgattatttcagAAATCCGAAGGTGGATTGTTCATTGACATGAGTACGTTTCTTGCGTTTGGGAAGGACTGTGTGGACTGGAACTATGAGAAGACTGGAAATCCTGTTTATT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0014g03920.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA06G39770.1 (Glycine max), 3'ss of exon 1
ttgctgattatttgtttgttgaacagataaatgctgtcaatggtttaactcagcatttc---tcaaagattttgtttgttgattgtgttgctgattatttcagAAATCCGAAGGTGGATTGTTCATTGACATGAGTACGTTTCTTGCGTTTGGGAAGGACTGTGTGGACTGGAACTATGAGAAGACTGGAAATCCTGTTTATT
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-aaatggtggattttttagtatgttgcaatgtgtttagagcttcacagtgcaggaatttgattcttggtgctgattttttaattttttttatga--attttagAGGTCAGAAGGTGGTTTGTTCATTGACATGTGCACTTTTCTTGCTTTTGGGAAAGATTTTGTTGGTTGGAATTATGAGAAGACTGGAAATCCTGTCTATT
upper sequence: Vv19s0014g03920.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA12G22240.1 (Glycine max), 3'ss of exon 1
--------ttgctgattatttgtttgttga-acagataaatgctgtcaatggtttaactcagcatttctcaaagattttgtttgttgattgtgttgctgattatttcagAAATCCGAAGGTGGATTGTTCATTGACATGAGTACGTTTCTTGCGTTTGGGAAGGACTGTGTGGACTGGAACTATGAGAAGACTGGAAATCCTGTTTATT
||| || ||||| |||| | ||| | | || || || | || | | |||| ||| || || ||| |||| ||| || |||||||| |||||| | |||||| |||| |||||||| || |||||||| | ||| | ||||| ||||||||||||||||||||||| ||||
ttggattcctgcaatttttttgtatgttaatgtgtatagagcttcacagtgcaggaaattgatgcttggtactggttttttttttt-------ctgatga--attttagAGGTCGGAAGGTGGTTTGTTCGTCGACATGTGTACTTTTCTTGCTTTCGGGAAGGATTTTGTTGGTTGGAATTATGAGAAGACTGGAAATCCTGTCTATT
upper sequence: Vv19s0014g03920.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT3G20630.1 (Arabidopsis thaliana), 3'ss of exon 1
--------ttgctgattatttgtttg-ttgaacagataaatgctgtcaatggtttaactcagcatttctcaaagattttgtttgttgattgtgttgctgattatttcagAAATCCGAAGGTGGATTGTTCATTGACATGAGTACGTTTCTTGCGTTTGGGAAGGACTGTGTGGACTGGAACTATGAGAAGACTGGAAATCCTGTTTATT
| || || |||| || || || || | | ||| ||||| | ||||| | | | | || ||||| |||||| ||||||||| ||||||||| |||| |||| || |||||||| || |||||||| | ||| ||||||||||||||||||||||| |||||||||
gtaaagcctctctctcacttcgttttcttcttcaaattccgactactctcgactcttctctcgttttcttc--ggttttgatgaat--tcgcaatgatgatt--ttcagAGATCCGAAGGAGGATTGTTCGTTGATATGAATAGTTTTCTTGCTTTCGGGAAGGATTATGTTTCTTGGAACTATGAGAAGACTGGAAACCCTGTTTATC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taactcagcatttctcaaagattttgtttgttgattgtgttgctgattatttcagAAATCCGAAGGTGGATTGTTCATTGACATGAGTACGTTTCTTGCGTTTGGGAAGGACTGTGTGGACTGGAACTATGAGAAGACTGGAAATCCTGTTTATT
tgctgat putative branch site (score: 3)
ttatttc CT-rich tract
aaagatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttgctgattatttgtttgttgaacagataaatgctgtcaatggtttaactcagcatttctcaaagattttgtttgttgattgtgttgctgattatttcagAAATCCGAAGGTGGATTGTTCATTGACATGAGTACGTTTCTTGCGTTTGGGAAGGACTGTGTGGACTGGAACTATGAGAAGACTGGAAATCCTGTTTATT
-tgctgat
- - - - - - - - - - - - agataaa
- - - - - - - - - - - - - - - - -ctgtcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgct