Sequence
atgc intronic sequence ATGC exonic sequence...atagctagtctctcatttttatttttcttctagtgtaccgttcttaattttgttggttctttattgtcttattttaccttttttattttcttaaaaatagGAAGAAGATAGTAGAAAGAAAATGGAAGAGTTAATGCTTCAGCGTCAGAAGAGAATTGCAGAGAGAAGTGCTGCTAATGGATTCACTCCAACATCTAAGA
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|27579972|gb|CB002667.1|CB002667EST: AACCATCTCCTGGAAGCAGAAACACAATTCAGAAGAGTAAATCTGAAAAG GAAGAAGATAGTAGAAAGAAAATGGAAGAGTTAATGCTTCAGCGTCAGAAG
genomic: AACCATCTCCTGGAAGCAGAAACACAATTCAGAAGAGTAAATCTGAAAAGgtaaacaaac ... ttaaaaatagGAAGAAGATAGTAGAAAGAAAATGGAAGAGTTAATGCTTCAGCGTCAGAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aattttgttggttctttattgtcttattttaccttttttattttcttaaaaatagGAAGAAGATAGTAGAAAGAAAATGGAAGAGTTAATGCTTCAGCGTCAGAAGAGAATTGCAGAGAGAAGTGCTGCTAATGGATTCACTCCAACATCTAAGA
tcttaat putative branch site (score: 3)
ttctttattgtcttat putative PPT
tttattgtcttatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atagctagtctctcatttttatttttcttctagtgtaccgttcttaattttgttggttctttattgtcttattttaccttttttattttcttaaaaatagGAAGAAGATAGTAGAAAGAAAATGGAAGAGTTAATGCTTCAGCGTCAGAAGAGAATTGCAGAGAGAAGTGCTGCTAATGGATTCACTCCAACATCTAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - -ctctcat
- - - - - - - - - - - - - cttctag
- - - - - - - - - - - - - - - - - - - - - - - - -ttgttgg