1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtctcttctgctttcttctctcatttggagtttctttctttctttttcttgctttttcttgtttttctcatcaaatgtgcacgtcgggttgattctcttttgggaattgcttgtgggtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTTTCAGACCATGTCAAGGCTGACTTCAGCTCTTCTGCATTGAGGAACAAG
species | Vitis vinifera |
transcript | Vv19s0014g03160.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTTEST: gi|351014316|gb|FQ437318.1|FQ437318
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTTEST: gi|161708278|gb|FC057463.1|FC057463
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: TATGCAAGCTGCTTGCTTGGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGG GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTEST: gi|71869221|gb|DT018276.1|DT018276
genomic: TATGCAAGCTGC-TGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGA-Ggtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACT
EST: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTTEST: gi|351014319|gb|FQ437321.1|FQ437321
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTTEST: gi|349825165|gb|FQ415712.1|FQ415712
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTTEST: gi|349828186|gb|FQ415514.1|FQ415514
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTTEST: gi|351043250|gb|FQ443971.1|FQ443971
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTTEST: gi|349825101|gb|FQ415648.1|FQ415648
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTTEST: gi|349823391|gb|FQ402590.1|FQ402590
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTTEST: gi|351012575|gb|FQ430139.1|FQ430139
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTTEST: gi|37188642|gb|CF607991.1|CF607991
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTTEST: gi|110731615|gb|EE106182.1|EE106182
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTTEST: gi|351042481|gb|FQ429241.1|FQ429241
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTTEST: gi|349832270|gb|FQ420831.1|FQ420831
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTTEST: gi|351048774|gb|FQ449642.1|FQ449642
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTTEST: gi|351033062|gb|FQ446415.1|FQ446415
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTTEST: gi|349807157|gb|FQ401148.1|FQ401148
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTTEST: gi|18458841|gb|BM437119.1|BM437119
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTTEST: gi|110693994|gb|EE070714.1|EE070714
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTTEST: gi|71874159|gb|DT023214.1|DT023214
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTTEST: gi|349828187|gb|FQ415515.1|FQ415515
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTTEST: gi|351028641|gb|FQ446314.1|FQ446314
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTTEST: gi|77580174|gb|DV218989.1|DV218989
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTTEST: gi|71869540|gb|DT018595.1|DT018595
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCCCGGAG GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTTEST: gi|110693068|gb|EE068976.1|EE068976
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTTEST: gi|349829235|gb|FQ419767.1|FQ419767
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCGCTTEST: gi|349827196|gb|FQ421469.1|FQ421469
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTTEST: gi|351022959|gb|FQ428868.1|FQ428868
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTTEST: gi|351024442|gb|FQ426251.1|FQ426251
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTTEST: gi|110700041|gb|EE077629.1|EE077629
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
EST: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAG GGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
genomic: CTATGCAAGCTGCTGCTTTGGTTCCCTCCGCTTTCTCCATCCCCAAGGAGgtctcttctg ... gtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTT
caaatgtgcacgtcgggttgattctcttttgggaattgcttgtgggtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTTTCAGACCATGTCAAGGCTGACTTCAGCTCTTCTGCATTGAGGAACAAG
ggttgat putative branch site (score: 5)
tttttgc putative PPT
ttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctcttctgctttcttctctcatttggagtttctttctttctttttcttgctttttcttgtttttctcatcaaatgtgcacgtcgggttgattctcttttgggaattgcttgtgggtttttgcagGGGAAGGGCAGTGCATCTTTCAAGGAATCTGGTCTTTTTGGAGTTTCACTTTCAGACCATGTCAAGGCTGACTTCAGCTCTTCTGCATTGAGGAACAAG
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