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...ccatagtgtggttggttggttttgttgtgtgttttttgtgtctaattatgtggaaacattcctctattgaatggctaaagtgttggaaatggtgtttcagATATGGGATTTGAAGCCAATCCGGGAATTCTTAGCCCCATTTCATGAGCACTTGATTTCCATTTCAAATTGGAATTGGGTTTTGGTTTTGAGGAATGTGG
species | Vitis vinifera |
transcript | Vv19s0014g02310.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGAAGGATCCATGGCTTCTTCTCATCAACGACTACCAACCTATTAACAG ATATGGGATTTGAAGCCAATCCGGGAATTCTTAGCCCCATTTCATGAGCACEST: gi|352768969|gb|FQ468160.1|FQ468160
genomic: GAGAAGGATCCATGGCTTCTTCTCATCAACGACTACAAACCTATTAACAGgtgagtccca ... ggtgtttcagATATGGGATTTGAAGCCAATCCGGGAATTCTTAGCCCCATTTCATGAGCAC
EST: GAGAAGGATCCATGGCTTCTTCTCATCAACGACTACAAACCTATTAACAG ATATGGGATTTGAAGCCAATCCGGGAATTCTTAGCCCCATTTCATGAGCACEST: gi|352781734|gb|FQ469032.1|FQ469032
genomic: GAGAAGGATCCATGGCTTCTTCTCATCAACGACTACAAACCTATTAACAGgtgagtccca ... ggtgtttcagATATGGGATTTGAAGCCAATCCGGGAATTCTTAGCCCCATTTCATGAGCAC
EST: GAGAAGGATCCATGGCTTCTTCTCATCAACGACTACAAACCTATTAACAG ATATGGGATTTGAAGCCAATCCGGGAATTCTTAGCCCCATTTCATGAGCACEST: gi|352781360|gb|FQ468204.1|FQ468204
genomic: GAGAAGGATCCATGGCTTCTTCTCATCAACGACTACAAACCTATTAACAGgtgagtccca ... ggtgtttcagATATGGGATTTGAAGCCAATCCGGGAATTCTTAGCCCCATTTCATGAGCAC
EST: GAGAAGGATCCATGGCTTCTTCTCATCAACGACTACAAACCTATTAACAG ATATGGGATTTGAAGCCAATCCGGGAATTCTTAGCCCCATTTCATGAGCACEST: gi|352769491|gb|FQ468419.1|FQ468419
genomic: GAGAAGGATCCATGGCTTCTTCTCATCAACGACTACAAACCTATTAACAGgtgagtccca ... ggtgtttcagATATGGGATTTGAAGCCAATCCGGGAATTCTTAGCCCCATTTCATGAGCAC
EST: GAGAAGGATCCATGGCTTCTTCTCATCAACGACTACAAACCTATTAACAG ATATGGGATTTGAAGCCAATCCGGGAATTCTTAGCCCCATTTCATGAGCACEST: gi|352764225|gb|FQ471205.1|FQ471205
genomic: GAGAAGGATCCATGGCTTCTTCTCATCAACGACTACAAACCTATTAACAGgtgagtccca ... ggtgtttcagATATGGGATTTGAAGCCAATCCGGGAATTCTTAGCCCCATTTCATGAGCAC
EST: GAGAAGGATCCATGGCTTCTTCTCATCAACGACTACAAACCTATTAACAG ATATGGGATTTGAAGCCAATCCGGGAATTCTTAGCCCCATTTCATGAGCAC
genomic: GAGAAGGATCCATGGCTTCTTCTCATCAACGACTACAAACCTATTAACAGgtgagtccca ... ggtgtttcagATATGGGATTTGAAGCCAATCCGGGAATTCTTAGCCCCATTTCATGAGCAC
ttatgtggaaacattcctctattgaatggctaaagtgttggaaatggtgtttcagATATGGGATTTGAAGCCAATCCGGGAATTCTTAGCCCCATTTCATGAGCACTTGATTTCCATTTCAAATTGGAATTGGGTTTTGGTTTTGAGGAATGTGG
ggctaaa putative branch site (score: 3)
tattgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccatagtgtggttggttggttttgttgtgtgttttttgtgtctaattatgtggaaacattcctctattgaatggctaaagtgttggaaatggtgtttcagATATGGGATTTGAAGCCAATCCGGGAATTCTTAGCCCCATTTCATGAGCACTTGATTTCCATTTCAAATTGGAATTGGGTTTTGGTTTTGAGGAATGTGG
- - - - tggttgg
- - - - - - - - - - - - -tgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgttgg