1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttcaaattttgggtatcaaagaaaataaacttttaaatcttttttattattattatttgaaccagtcttatttcttgatgatttctattttctgctgcagCAAGTGCAGGGACAAACAGAGCTGCCTCTAGCAGCACTTCTTTGAACACAAGGAAGCTTGATGAAGAAACAGAGAATCTTACTC
species | Vitis vinifera |
transcript | Vv19s0014g01260.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGTCAACGCCGCCCGTCGCATGGGCGCCGAGATCGAGACTGTCAAGAAGT CAAGTGCAGGGACAAATAGAGCTGCCTCTAGCAGCACTTCTTTGAACACAAEST: gi|110408619|gb|EC974256.1|EC974256
genomic: CGTCAACGCCGCCCGTCGCATGGGCGCCGAGATCGAGACTGTCAAGAAGTgtattcccct ... tctgctgcagCAAGTGCAGGGACAAACAGAGCTGCCTCTAGCAGCACTTCTTTGAACACAA
EST: CGTCAACGCCGCCCGTCGCATGGGCGCCGAGATCGAGACTGTCAAGAAGT CAAGTGCAGGGACAAACAGAGCTGCCTCTAGCAGCACTTCTTTGAACACAA
genomic: CGTCAACGCCGCCCGTCGCATGGGCGCCGAGATCGAGACTGTCAAGAAGTgtattcccct ... tctgctgcagCAAGTGCAGGGACAAACAGAGCTGCCTCTAGCAGCACTTCTTTGAACACAA
attattattatttgaaccagtcttatttcttgatgatttctattttctgctgcagCAAGTGCAGGGACAAACAGAGCTGCCTCTAGCAGCACTTCTTTGAACACAAGGAAGCTTGATGAAGAAACAGAGAATCTTACTC
tcttgat putative branch site (score: 4)
tttctattttctgct putative PPT
atgatttctatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcaaattttgggtatcaaagaaaataaacttttaaatcttttttattattattatttgaaccagtcttatttcttgatgatttctattttctgctgcagCAAGTGCAGGGACAAACAGAGCTGCCTCTAGCAGCACTTCTTTGAACACAAGGAAGCTTGATGAAGAAACAGAGAATCTTACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - ttttggg
- - - - - - - - - - -aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaacca