Sequence
atgc intronic sequence ATGC exonic sequence...tagtgaatgagaaaaatataaaaaaataggattataaaattataaaataaataaatcaacatcatatcattgacccacatgcaccattagtttcataaagTAACTAAAGCTACTTTAAAATTTCATTTTTGTTACGTGTCTGATTTTCCATGCCATAAATTTCCTGGGAATTCATCCTTAAACTCATTTGAATTTATAAA
Basic information
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aataaataaatcaacatcatatcattgacccacatgcaccattagtttcataaagTAACTAAAGCTACTTTAAAATTTCATTTTTGTTACGTGTCTGATTTTCCATGCCATAAATTTCCTGGGAATTCATCCTTAAACTCATTTGAATTTATAAA
cattgac putative branch site (score: 3)
attagtttcataaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tagtgaatgagaaaaatataaaaaaataggattataaaattataaaataaataaatcaacatcatatcattgacccacatgcaccattagtttcataaagTAACTAAAGCTACTTTAAAATTTCATTTTTGTTACGTGTCTGATTTTCCATGCCATAAATTTCCTGGGAATTCATCCTTAAACTCATTTGAATTTATAAA
- gtgaatg
- - - - - -aaaaata
- - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - -aaaatta
- - - - - - - - - - - - - - - - - - - - - -aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - aaatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acccaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcacca