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...ctttttgaattaaattaatgggaaaactttcatctttttccatttttctataaaattacttgccttgtttttacattcttgccaatttgattgattgaagGTGGTGATGGACATTCAACTTGTATCTTTTAATCGGAGCAACTTTTTGACTAAATTGTGGCAGAGTCATCAGTTTCGAGTAATTGGTACTCCCCAAAACA
species | Vitis vinifera |
transcript | Vv18s0166g00300.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAATCATTCATTCTTCAAACGCTGCGTTTTGGTCGATCTCTCTGCTCAAG GTGGTGATGGACATTCAACTTGTATCTTTTAATCGGAGCAACTTTTTGACTEST: gi|351043930|gb|FQ431361.1|FQ431361
genomic: CAATCATTCATTCTTCAAACGCTGCGTTTTGGTCGATCTCTCTGCTCAAGgtactgttcc ... ttgattgaagGTGGTGATGGACATTCAACTTGTATCTTTTAATCGGAGCAACTTTTTGACT
EST: CAATCATTCATTCTTCAAACGCTGCGTTTTGGTCGATCTCTCTGCTCAAG GTGGTGATGGACATTCAACTTGTATCTTTTAATCGGAGCAACTTTTTGACTEST: gi|349825486|gb|FQ419403.1|FQ419403
genomic: CAATCATTCATTCTTCAAACGCTGCGTTTTGGTCGATCTCTCTGCTCAAGgtactgttcc ... ttgattgaagGTGGTGATGGACATTCAACTTGTATCTTTTAATCGGAGCAACTTTTTGACT
EST: CAATCATTCATTCTTCAAACGCTGCGTTTTGGTCGATCTCTCTGCTCAAG GTGGTGATGGACATTCAACTTGTATCTTTTAATCGGAGCAACTTTTTGACTEST: gi|351028553|gb|FQ444834.1|FQ444834
genomic: CAATCATTCATTCTTCAAACGCTGCGTTTTGGTCGATCTCTCTGCTCAAGgtactgttcc ... ttgattgaagGTGGTGATGGACATTCAACTTGTATCTTTTAATCGGAGCAACTTTTTGACT
EST: CAATCATTCATTCTTCAAACGCTGCGTTTTGGTCGATCTCTCTGCTCAAG GTGGTGATGGACATTCAACTTGTATCTTTTAATCGGAGCAACTTTTTGACT
genomic: CAATCATTCATTCTTCAAACGCTGCGTTTTGGTCGATCTCTCTGCTCAAGgtactgttcc ... ttgattgaagGTGGTGATGGACATTCAACTTGTATCTTTTAATCGGAGCAACTTTTTGACT
ttctataaaattacttgccttgtttttacattcttgccaatttgattgattgaagGTGGTGATGGACATTCAACTTGTATCTTTTAATCGGAGCAACTTTTTGACTAAATTGTGGCAGAGTCATCAGTTTCGAGTAATTGGTACTCCCCAAAACA
gattgat putative branch site (score: 4)
taaaattactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttttgaattaaattaatgggaaaactttcatctttttccatttttctataaaattacttgccttgtttttacattcttgccaatttgattgattgaagGTGGTGATGGACATTCAACTTGTATCTTTTAATCGGAGCAACTTTTTGACTAAATTGTGGCAGAGTCATCAGTTTCGAGTAATTGGTACTCCCCAAAACA
- - - - - -aaattaa
- - - - - - - - - -gggaaaa
- - - - - - - - - - - - - - - - - - - -ccatttt
- - - - - - - - - - - - - - - - - - - - - - - - - -aaaatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgcca