Sequence
atgc intronic sequence ATGC exonic sequence...tagaatttgtgagggaaagaggaaagaaaaacaacagttgggtgtagcagaaactacatattaacattaatgctcgtgatgggtggaattgtggttgcagATGTAGCAAAGATGGGAGAAAGAGAGTGGTATTTCTTCAGTTTAAGGGACAGAAAGTACCCAACAGGGTTGAGAACAAACAGGGCAACTGGAGCTGGGTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0122g00800.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA04G01650.1 (Glycine max), 3'ss of exon 1
tagaatttgtgagggaaagaggaaagaaaaacaacagttgggtgtagcagaaactacatat-taacattaatgctcgtga-tgggtggaattgtg----gttgcagATGTAGCAAAGATGGGAGAAAGAGAGTGGTATTTCTTCAGTTTAAGGGACAGAAAGTACCCAACAGGGTTGAGAACAAACAGGGCAACTGGAGCTGGGTA
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-----atgataagcatatttataatctcgaacattt-ttccatgccctggattcaacaagtgtagtgttaatgttaattactaattaatgttgtgtgaggaagcagATGTGGCAAAGATGGGGGAGAGAGAATGGTATCTGTTCAGCTTGAGGGACAGAAAATACCCAACTGGACTAAGAACAAACAGAGCAACCGGAGCTGGGTA
upper sequence: Vv18s0122g00800.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT1G76420.1 (Arabidopsis thaliana), 3'ss of exon 1
---------------------------tagaatttgtgagggaaagag-gaaagaaaaacaacagttgggtgtagc-agaaactacatattaacattaatgctcgtgatgggt-ggaattgtggttgc----agATGTAGCAAAGATGGGAGAAAGAGAGTGGTATTTCTTCAGTTTAAGGGACAGAAAGTACCCAACAGGGTTGAGAACAAACAGGGCAACTGGAGCTGGGTA
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gtaatatattatacattttgtctcttctttacctcataagttttattttggaatcttgtttttagttgaatattttgataaatcttttaacaagaaaaaagt--gtaacgttttgaaattgttgttatatgaagAAATGGCGAAGATGGGAGAGAGAGAGTGGTACTTTTATAGTCTAAGGGACAGGAAATATCCGACAGGTTTGAGGACTAACAGAGCAACTACTGCTGGATA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agcagaaactacatattaacattaatgctcgtgatgggtggaattgtggttgcagATGTAGCAAAGATGGGAGAAAGAGAGTGGTATTTCTTCAGTTTAAGGGACAGAAAGTACCCAACAGGGTTGAGAACAAACAGGGCAACTGGAGCTGGGTA
aaactacatattaaca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tagaatttgtgagggaaagaggaaagaaaaacaacagttgggtgtagcagaaactacatattaacattaatgctcgtgatgggtggaattgtggttgcagATGTAGCAAAGATGGGAGAAAGAGAGTGGTATTTCTTCAGTTTAAGGGACAGAAAGTACCCAACAGGGTTGAGAACAAACAGGGCAACTGGAGCTGGGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - -ggaaaga
- - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - acaacag
- - - - - - - - - - - - - - - - - - -ttgggtg
- - - - - - - - - - - - - - - - - - - - - - - -cagaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggtgga