1 5' 3' | 2 5' 3' | 3 5' 3' |
gtacactttttaattttcctttctttttatctttattttctgatgtgttttTTTTTATTATACTCCTCCATTTCACGGGGATTTTTGAATTGTTGAATTTCGAAACAGTTGGAATTAGAAATCAAAACCCTAGCTGTCCTTGGAAGAGGAT
species | Vitis vinifera |
transcript | Vv18s0122g00600.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
gtacactttttaattttcctttctttttatctttattttctgatgtgttttTTTTTATTATACTCCTCCATTTCACGGGGATTTTTGAATTGTTGAATTTCGAAACAGTTGGAATTAGAAATCAAAACCCTAGCTGTCCTTGGAAGAGGAT
ttctgat putative branch site (score: 3)
ctttttaattttcctt CT-rich tract
actttttaattttcct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacactttttaattttcctttctttttatctttattttctgatgtgttttTTTTTATTATACTCCTCCATTTCACGGGGATTTTTGAATTGTTGAATTTCGAAACAGTTGGAATTAGAAATCAAAACCCTAGCTGTCCTTGGAAGAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT