Sequence
atgc intronic sequence ATGC exonic sequencegtaagtgaagctaatggcttcaacacctattactagtactataactcctagtatacatcttgatgtttttttgtttctttgtcacagGAGTGTGGTTCATGCACTGTCATTTAGATCGCCACCTTACATGGGGCATGGATATGGTGTTCATAGTAAGAGATGGAGATCAATGGGACGAACGCATGCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0122g00370.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA20G31280.1 (Glycine max), 3'ss of exon 4
-------------------------gtaagtgaagctaatggcttcaacacctattactagtactataactcctagtat-acatcttgatgtttttttgt--------------ttctttgtcacagGAGTGTGGTTCATGCACTGTCATTTAGATCGCCACCTTACATGGGGCATGGATATGGTGTTCATAGTAAGAGATGGAGATCAATGGGACGAACGCATGCT
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gtatgtggcttggaatactagcttattatattgatttaat--tcttaatttccaattttcattttataagttgagatttgagaacttgtttttgttgcatgaaccgcatgtgccttttcaattacagGAGTATGGTTCATGCACTGTCATCTAGAGCGCCACCAAGCTTGGGGCATGGAGACGGTGTTTATTGTGAAGAATGGAAAGGCTTCAAATGAAACATTACC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctagtactataactcctagtatacatcttgatgtttttttgtttctttgtcacagGAGTGTGGTTCATGCACTGTCATTTAGATCGCCACCTTACATGGGGCATGGATATGGTGTTCATAGTAAGAGATGGAGATCAATGGGACGAACGCATGCT
tttttttgtttctttg CT-rich tract
tttttttgtttcttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtgaagctaatggcttcaacacctattactagtactataactcctagtatacatcttgatgtttttttgtttctttgtcacagGAGTGTGGTTCATGCACTGTCATTTAGATCGCCACCTTACATGGGGCATGGATATGGTGTTCATAGTAAGAGATGGAGATCAATGGGACGAACGCATGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA