1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tccttctgttgtttttatttttcagcggccaaaaggtgcataattaattcttatcatctgttttgaatttcacttttttcctcgttttttcctactgcagGAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG
species | Vitis vinifera |
transcript | Vv18s0117g00150.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGG GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCAACGEST: gi|110712411|gb|EE090004.1|EE090004
genomic: TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGGgttcgtttct ... cctactgcagGAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG
EST: TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGG GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACGEST: gi|161711381|gb|FC059938.1|FC059938
genomic: TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGGgttcgtttct ... cctactgcagGAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG
EST: TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGG GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACGEST: gi|110719186|gb|EE096875.1|EE096875
genomic: TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGGgttcgtttct ... cctactgcagGAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG
EST: TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGG GAAGATTTTCATTGGAGGATTGGCGAAGGATACGACCTACGEST: gi|71873142|gb|DT022197.1|DT022197
genomic: TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGGgttcgtttct ... cctactgcagGAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG
EST: TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGG GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACGEST: gi|161721778|gb|FC071127.1|FC071127
genomic: TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGGgttcgtttct ... cctactgcagGAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG
EST: TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGG GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACGEST: gi|161706369|gb|FC055475.1|FC055475
genomic: TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGGgttcgtttct ... cctactgcagGAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG
EST: TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGG GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACGEST: gi|37188093|gb|CF607444.1|CF607444
genomic: TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGGgttcgtttct ... cctactgcagGAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG
EST: TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGG GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACGEST: gi|351030617|gb|FQ437043.1|FQ437043
genomic: TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGGgttcgtttct ... cctactgcagGAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG
EST: TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGG GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACGEST: gi|351027170|gb|FQ440038.1|FQ440038
genomic: TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGGgttcgtttct ... cctactgcagGAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG
EST: TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGG GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACGEST: gi|110710940|gb|EE087573.1|EE087573
genomic: TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGGgttcgtttct ... cctactgcagGAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG
EST: TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGG GAAGATTTTCATTGGAGGATTGGCGAAGGATACGACCTACGEST: gi|351014903|gb|FQ438103.1|FQ438103
genomic: TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGGgttcgtttct ... cctactgcagGAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG
EST: TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGG GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACGEST: gi|351039455|gb|FQ461322.1|FQ461322
genomic: TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGGgttcgtttct ... cctactgcagGAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG
EST: TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGG GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACGEST: gi|110707058|gb|EE083127.1|EE083127
genomic: TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGGgttcgtttct ... cctactgcagGAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG
EST: TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGG GAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG
genomic: TCGAAATTGAAGGGCAATACTACTCACACAGGCGATGGTGCTAGTCCTGGgttcgtttct ... cctactgcagGAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG
aattcttatcatctgttttgaatttcacttttttcctcgttttttcctactgcagGAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG
aattaat putative branch site (score: 3)
tttcacttttttcctc putative PPT
aatttcactttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccttctgttgtttttatttttcagcggccaaaaggtgcataattaattcttatcatctgttttgaatttcacttttttcctcgttttttcctactgcagGAAGATTTTCATTGGAGGATTGGCGAAGGATACAACCTACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
tccttct
- - - - - - - - - - - - - - ccaaaag
- - - - - - - - - - - - - - - - - -gtgcata