Sequence
atgc intronic sequence ATGC exonic sequence...aaattaaagtaaaatagcataagatctttagaatgagatcaactatgtcattttatttacattatctgctattaatgcattttatattaatatcttctagATTAAGTCAAAGGGTGTGACGATGACAGCATTACTTGCAAAGGCAACAGCACTTGCTTTGGTTAAACATCCTGTTGTAAACTCTAGTTGCAGAGATGGTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0072g01000.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA10G35960.1 (Glycine max), 3'ss of exon 2
--aaattaaagtaaaatagcataagatctttagaatgagatcaactatgtcattttatttacattatctg-ctattaatgcattttatattaatatcttctagATTAAGTCAAAGGGTGTGACGATGACAGCATTACTTGCAAAGGCAACAGCACTTGCTTTGGTTAAACATCCTGTTGTAAACTCTAGTTGCAGAGATGGTA
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cagtttttcaaacgatttctatgagtaccttggactt---ccggattcatacccaaactgttaatatatgtctattgattgattctattttataaaatttcagATCAAGTCAAAGGGAGTCACAATGACAGCATTGCTTGCTAAGGCTACTGCACTTGCGCTGGTTAAACACCCTGTTATGAACTCTAGTTGTAGAGATGGTA
upper sequence: Vv18s0072g01000.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA20G31630.1 (Glycine max), 3'ss of exon 2
--aaattaaagtaaaatagcataagatctttagaatgagatcaactatgtcattttatttacattatctg-ctattaatgcattttatattaatatcttctagATTAAGTCAAAGGGTGTGACGATGACAGCATTACTTGCAAAGGCAACAGCACTTGCTTTGGTTAAACATCCTGTTGTAAACTCTAGTTGCAGAGATGGTA
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cagtttttcaaatgatttctatgagtaccttgaactt---ccggattcatacccaaactgttaatatctgtctattgattgaatctattttataaaatttcagATTAAGTCAAAGGGAGTCACAATGACAGCGTTGCTTGCTAAGGCTACTGCACTTGCACTTGTTAAACACCCTGTTATGAACTCTAGTTGTAGAGATGGTA
upper sequence: Vv18s0072g01000.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT1G34430.1 (Arabidopsis thaliana), 3'ss of exon 1
aaattaaagtaaaatagcataag-atctttagaatgagatcaactatgtcattttatttacattatctgctattaatgcattttatattaatatcttctagATTAAGTCAAAGGGTGTGACGATGACAGCATTACTTGCAAAGGCAACAGCACTTGCTTTGGTTAAACATCCTGTTGTAAACTCTAGTTGCAGAGATGGTA
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aaatgatagtatcttatgatgtgcatcagaagcat-acactagttacaaactgtaagtgtaaatgttgatttggttcacattttgtgtttggtttgtttagATTAAGTCGAAAGGTGTGACAATGACGGCACTTTTAGCAAAGGCAACTGCACTTGCACTGGCGAAACATCCAGTTGTAAACTCGTCTTGTAGAGATGGTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110383970|gb|EC948379.1|EC948379EST: AGTTGGGTACACCATAACTACTGATGCTCTTGATGCCCTCTACAAGAAG ATTAAGTCAAAGGGTGTGACGATGACAGCATTACTTGCAAAGGCAACAGCA
genomic: AGTTGGGTACACCATAACTACTGATGCTCTTGATGCCCTCTACAAGAAGgtaggacatt ... tatcttctagATTAAGTCAAAGGGTGTGACGATGACAGCATTACTTGCAAAGGCAACAGCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtcattttatttacattatctgctattaatgcattttatattaatatcttctagATTAAGTCAAAGGGTGTGACGATGACAGCATTACTTGCAAAGGCAACAGCACTTGCTTTGGTTAAACATCCTGTTGTAAACTCTAGTTGCAGAGATGGTA
tattaat putative branch site (score: 2)
tatcttct CT-rich tract
tattaatgcattttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaattaaagtaaaatagcataagatctttagaatgagatcaactatgtcattttatttacattatctgctattaatgcattttatattaatatcttctagATTAAGTCAAAGGGTGTGACGATGACAGCATTACTTGCAAAGGCAACAGCACTTGCTTTGGTTAAACATCCTGTTGTAAACTCTAGTTGCAGAGATGGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
aaattaa
- - - - -taaaata
- - - - - - - - - - - - - - - -aatgaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgctat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgcat