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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtcttcacacgcacaccagttctgtttctatttgttacttttctttgaattcccatttgtataggttgaaagagcactcttttaatatgtgaaatttgtgtttgggtattgctaaataatgttaaaaatttcctgagtcttttgagttaaaaatgtgcagATTTTGATGGGTGTGATTAATATCTACGATATTTCCTCTCTTTGTGTGGTCAAACACAATACTGATATTCACTTATTGGAACCCCGAGCACCCATTTGTT

Basic information

species Vitis vinifera
transcript Vv18s0072g00940.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110371814|gb|EC935938.1|EC935938
EST:     GCCACCACCCATTGA                         ATTTTGATGGGTGTGATTAATATCTACGATATTTCCTCTCTTTGTGTGGTC
genomic: GCCACCACCCATTGAgtaggtcttc ... aaatgtgcagATTTTGATGGGTGTGATTAATATCTACGATATTTCCTCTCTTTGTGTGGTC
EST: gi|71857670|gb|DT006725.1|DT006725
EST:     TTTATACGATTTTCATTTCTCACTGCTCTCTTGCTGCCACCACCCATTGA                         ATTTTGATGGGTGTGATTAATATCTACGATATTTCCTCTCTTTGTGTGGTC
genomic: TTTATACGATTTTCATTTCTCACTGCTCTCTTGCTGCCACCACCCATTGAgtaggtcttc ... aaatgtgcagATTTTGATGGGTGTGATTAATATCTACGATATTTCCTCTCTTTGTGTGGTC
EST: gi|37185120|gb|CF604473.1|CF604473
EST:     TTGATACGATTTTCATTTCTCACTGCTCTCTTGCTGCCACCACCCATTGA                         ATTTTGATGGGTGTGATTAATATCTACGATATTTCCTCTCTTTGTGTGGTC
genomic: TTTATACGATTTTCATTTCTCACTGCTCTCTTGCTGCCACCACCCATTGAgtaggtcttc ... aaatgtgcagATTTTGATGGGTGTGATTAATATCTACGATATTTCCTCTCTTTGTGTGGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtattgctaaataatgttaaaaatttcctgagtcttttgagttaaaaatgtgcagATTTTGATGGGTGTGATTAATATCTACGATATTTCCTCTCTTTGTGTGGTCAAACACAATACTGATATTCACTTATTGGAACCCCGAGCACCCATTTGTT
    tgctaaa  putative branch site (score: 2)
       taaataatgttaaaaa  TA-rich tract