1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aaacctttcaggatatccaatattccttgtcaccacattcttctgaaattgagactacatctatctctcaacttctcttaatgttgctgtttaaacccagGTTACTACTCAGCGTTGTAGTGCACCCACTTCAGCAACCTCTGTGACAGATCATGGGCTGGATGTCACTGAATCTCCTATATTGCAG
species | Vitis vinifera |
transcript | Vv18s0072g00860.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATTCTTCATCTGGGTCTCGCAATTGGAGGCCTTACAGACTCGCTCTTGAG GTTACTACTCAGCGTTGTAGTGCACCCACTTCAGCAACCTCTGTGACAGATEST: gi|294964617|gb|GW838420.1|GW838420
genomic: ATTCTTCATCTGGGTCTCGCAATTGGAGGCCTTACAGACTCGCTCTTGAGgtaaaacccc ... ttaaacccagGTTACTACTCAGCGTTGTAGTGCACCCACTTCAGCAACCTCTGTGACAGAT
EST: ATTCTTCATCTGGGTCTCGCAATTGGAGGCCTTACAGACTCGCTCTTGAG GTTACTACTCAGCGTTGTAGTGCACCCACTTCAGCAACCTCTGTGACAGATEST: gi|29784943|gb|CB341514.2|CB341514
genomic: ATTCTTCATCTGGGTCTCGCAATTGGAGGCCTTACAGACTCGCTCTTGAGgtaaaacccc ... ttaaacccagGTTACTACTCAGCGTTGTAGTGCACCCACTTCAGCAACCTCTGTGACAGAT
EST: ATTCTTCATCTGGGTCTCGCAATTGGAGGCCTTACAGACTCGCTCTTGAG GTTACTACTCAGCGTTGTAGTGCACCCACTTCAGCAACCTCTGTGACAGATEST: gi|161706057|gb|FC056226.1|FC056226
genomic: ATTCTTCATCTGGGTCTCGCAATTGGAGGCCTTACAGACTCGCTCTTGAGgtaaaacccc ... ttaaacccagGTTACTACTCAGCGTTGTAGTGCACCCACTTCAGCAACCTCTGTGACAGAT
EST: ATTCTTCATCTGGGTCTCGCAATTGGAGGCCTTACAGACTCGCTCTTGAG GTTACTACTCAGCGTTGTAGTGCACCCACTTCAGCAACCTCTGTGACAGAT
genomic: ATTCTTCATCTGGGTCTCGCAATTGGAGGCCTTACAGACTCGCTCTTGAGgtaaaacccc ... ttaaacccagGTTACTACTCAGCGTTGTAGTGCACCCACTTCAGCAACCTCTGTGACAGAT
aaattgagactacatctatctctcaacttctcttaatgttgctgtttaaacccagGTTACTACTCAGCGTTGTAGTGCACCCACTTCAGCAACCTCTGTGACAGATCATGGGCTGGATGTCACTGAATCTCCTATATTGCAG
tcttaat putative branch site (score: 3)
ttaatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaacctttcaggatatccaatattccttgtcaccacattcttctgaaattgagactacatctatctctcaacttctcttaatgttgctgtttaaacccagGTTACTACTCAGCGTTGTAGTGCACCCACTTCAGCAACCTCTGTGACAGATCATGGGCTGGATGTCACTGAATCTCCTATATTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- -cctttca
- - - - - - - - - - - ttccttg
- - - - - - - - - - - - - - - caccaca
- - - - - - - - - - - - - - - - - - - tcttctg
- - - - - - - - - - - - - - - - - - - - - - -aaattga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgct