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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgctttgaaaccctaaccctactctctctttctttgttttttttgttttccgtgttttagatctgtgttcccaccgctcagaatctaggttttttttgtggcttctgctgcattgtgttgttggtttgtgaaattttttctttgttttgaggaatggattcgtgtggtttgacgtttttggtggttttgcagATGGATCGGTACCAGAGAGTGGAGAAGCCGAGGCCTGAAACTCCGATCAACGAGAATGAGATTCGCATTACTGCTCAGGGCCGTATGAGGAACTACATTA

Basic information

species Vitis vinifera
transcript Vv18s0072g00330.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71875822|gb|DT024877.1|DT024877
EST:     AGAGAGCCAAAACCACAGCACCCTCCTCTCTTCTACCACATACATCAACC                         ATGGATCGGTACCAGAGAGTGGAGAAGCCGAGGCCTGAAACTCCGATCAAC
genomic: AGAGAGCCAAAACCACAGCACCCTCCTCTCTTCTACCACATACATCAACCgtacgctttg ... ggttttgcagATGGATCGGTACCAGAGAGTGGAGAAGCCGAGGCCTGAAACTCCGATCAAC
EST: gi|349832332|gb|FQ420893.1|FQ420893
EST:     AGAGAGCCAAAACCACAGCACCCTCCTCTCTTCTACCACATACATCAACC                         ATGGATCGGTACCAGAGAGTGGAGAAGCCGAGGCCTGAAACTCCGATCAAC
genomic: AGAGAGCCAAAACCACAGCACCCTCCTCTCTTCTACCACATACATCAACCgtacgctttg ... ggttttgcagATGGATCGGTACCAGAGAGTGGAGAAGCCGAGGCCTGAAACTCCGATCAAC
EST: gi|110379018|gb|EC944186.1|EC944186
EST:     AGACAGTC-AAACCACAGCACCCTCCTCTCTTCTACCACATACATCAACC                         ATGGATCGGTACCAGAGAGTGGAGAAGCCGAGGCCTGAAACTCCGATCAAC
genomic: AGAGAGCCAAAACCACAGCACCCTCCTCTCTTCTACCACATACATCAACCgtacgctttg ... ggttttgcagATGGATCGGTACCAGAGAGTGGAGAAGCCGAGGCCTGAAACTCCGATCAAC
EST: gi|71867579|gb|DT016634.1|DT016634
EST:     AGAGAGCCAAAACCACAGCACCCTCCTCTCTTCTACCACATACATCAACC                         ATGGATCGGTACCAGAGAGTGGAGAAGCCGAGGCCTGAAACTCCGATCAAC
genomic: AGAGAGCCAAAACCACAGCACCCTCCTCTCTTCTACCACATACATCAACCgtacgctttg ... ggttttgcagATGGATCGGTACCAGAGAGTGGAGAAGCCGAGGCCTGAAACTCCGATCAAC
EST: gi|349811194|gb|FQ406182.1|FQ406182
EST:     AGAGAGCCAAAACCACAGCACCCTCCTCTCTTCTACCACATACATCAACC                         ATGGATCGGTACCAGAGAGTGGAGAAGCCGAGGCCTGAAACTCCGATCAAC
genomic: AGAGAGCCAAAACCACAGCACCCTCCTCTCTTCTACCACATACATCAACCgtacgctttg ... ggttttgcagATGGATCGGTACCAGAGAGTGGAGAAGCCGAGGCCTGAAACTCCGATCAAC
EST: gi|349826958|gb|FQ419049.1|FQ419049
EST:     AGAGAGCCAAAACCACAGCACCCTCCTCTCTTCTACCACATACATCAACC                         ATGGATCGGTACCAGAGAGTGGAGAAGCCGAGGCCTGAAACTCCGATCAAC
genomic: AGAGAGCCAAAACCACAGCACCCTCCTCTCTTCTACCACATACATCAACCgtacgctttg ... ggttttgcagATGGATCGGTACCAGAGAGTGGAGAAGCCGAGGCCTGAAACTCCGATCAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctttgttttgaggaatggattcgtgtggtttgacgtttttggtggttttgcagATGGATCGGTACCAGAGAGTGGAGAAGCCGAGGCCTGAAACTCCGATCAACGAGAATGAGATTCGCATTACTGCTCAGGGCCGTATGAGGAACTACATTA
                             gtttgac  putative branch site (score: 4)
                                     ttttt  TA-rich tract