1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atccgtagtgttcaatgattcctatggttttgttttcttttatttatggatggaatattgaaaatgtaattagagctatatgtcatatgggttctgacagTTGGGTGGGTTGGAAGCATTTGGGGTTGCCAAATGTGTGAAAGTTAATCCAGATTCGCCACAGAAGCAAGTGAGGTTCCTCACACTCTCTG
species | Vitis vinifera |
transcript | Vv18s0072g00300.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCACCACCGTATCCCTAATTTTGTTGGCGCTGCAGCTGCTGCTCAGAAA TTGGGTGGGTTGGAAGCATTTGGGGTTGCCAAATGTGTGAAAGTTAATCCAEST: gi|71861386|gb|DT010441.1|DT010441
genomic: TTCACCACCGTATCCCCAATTTTGTTGGCGCTGCAGCTGCTGCTCAGAAAgtgagttttt ... gttctgacagTTGGGTGGGTTGGAAGCATTTGGGGTTGCCAAATGTGTGAAAGTTAATCCA
EST: TTCACCACCGTATCCCCAATTTTGTTGGCGCTGCAGCTGCTGCTCAGAAA TTGGGTGGGTTGGAAGC-TTTGGGGTTGCCAAATGTGTGAAAGTTAATCEST: gi|77577615|gb|DV217549.1|DV217549
genomic: TTCACCACCGTATCCCCAATTTTGTTGGCGCTGCAGCTGCTGCTCAGAAAgtgagttttt ... gttctgacagTTGGGTGGGTTGGAAGCATTTGGGGTTGCCAAATGTGTGAAAGTTAATC
EST: TTCACCACCGTATCCCTAATTTTGTTGGCGCTGCAGCTGCTGCTCAGAAA TTGGGTGGGTTGGAAGCATTTGGGGTTGCCAAATGTGTGAAAGTTAATCCAEST: gi|110385632|gb|EC950176.1|EC950176
genomic: TTCACCACCGTATCCCCAATTTTGTTGGCGCTGCAGCTGCTGCTCAGAAAgtgagttttt ... gttctgacagTTGGGTGGGTTGGAAGCATTTGGGGTTGCCAAATGTGTGAAAGTTAATCCA
EST: TTCACCACCGTATCCCTAATTTTGTTGGCGCTGCAGCTGCTGCTCAGAAA TTGGGTGGGTTGGAAGCATTTGGGGTTGCCAAATGTGTGAAAGTTAATCCA
genomic: TTCACCACCGTATCCCCAATTTTGTTGGCGCTGCAGCTGCTGCTCAGAAAgtgagttttt ... gttctgacagTTGGGTGGGTTGGAAGCATTTGGGGTTGCCAAATGTGTGAAAGTTAATCCA
atggatggaatattgaaaatgtaattagagctatatgtcatatgggttctgacagTTGGGTGGGTTGGAAGCATTTGGGGTTGCCAAATGTGTGAAAGTTAATCCAGATTCGCCACAGAAGCAAGTGAGGTTCCTCACACTCTCTG
aatattgaaaatgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atccgtagtgttcaatgattcctatggttttgttttcttttatttatggatggaatattgaaaatgtaattagagctatatgtcatatgggttctgacagTTGGGTGGGTTGGAAGCATTTGGGGTTGCCAAATGTGTGAAAGTTAATCCAGATTCGCCACAGAAGCAAGTGAGGTTCCTCACACTCTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - -tcctatg
- - - - - - - - - - - - - - - - - - - - - - - tggatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaatg