Sequence
atgc intronic sequence ATGC exonic sequence...agaatgtttatttcaatatatatatatatatattggtagcaataagcatgatgctcatcatttgtttgttttgaattttaattactttaattttttgcagCTACAACATTAACTGGCTTGCATTTTGTTACCACAACCTTGATGACGGCTATTCTTAGGTGGCTTGGATACATCCAACCCTCTCATCTCCCCCTTCCAGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0072g00080.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os02g40090.4 (Oryza sativa), 3'ss of exon 2
-----------------------------------------agaatgtttatttc----aatatatatatatatatattgg-------tagcaataagcatgatgctcatcat-ttgtttgttttga--attttaattactttaattttttgcagCTACAACATTAACTGGCTTGCATTTTGTTACCACAACCTTGATGACGGCTATTCTTAGGTGGCTTGGATACATCCAACCCTCTCATCTCCCCCTTCCAGA
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gtaagacatgctataattcctcactcgtggttgaattgtcaagaatgccttgtccgcacgtcttatggatagttggactaaaccgaactatcgttgtgcagcaaaccagtcagattttttgtgctaatgatgtgttccattgtgtgtttgtgcagCTACAACATTGACTGGATTGCATTTTGCAACCACAACCTTGATGACATTAGTAATGAAATGGTTGGGACATATTCAGCCATCCTATTTACCATTGCCAGA
upper sequence: Vv18s0072g00080.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G08700.1 (Glycine max), 3'ss of exon 2
-agaatgtttatttcaatat----atatatatatatattggtagcaa------taagc-atgatgctc----atcatttgtttgttttgaattttaattacttta--attttttgcagCTACAACATTAACTGGCTTGCATTTTGTTACCACAACCTTGATGACGGCTATTCTTAGGTGGCTTGGATACATCCAACCCTCTCATCTCCCCCTTCCAGA
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gtaaattccctattcaatttcttaatggacgtttctgttattggcaaattccctatacgatcatgctctgatgttaattttttatcttttaatgtgatttgtctattactgcttgcagCCACAACATTAACAGGCATGCACTTTGCTACCACAACTTTGATGACAGTTGTACTAAGGATGCTGGGATATGTCCAGCCTTCTCATTTACCCTTGCCAGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161709701|gb|FC060180.1|FC060180EST: ATTCAGTTTTG CTACAACATTAACTGGC-TGCATTTTGTTACCACAACCTTGATGACGGCTA
genomic: ATTCAGTTTTGgtaattcttt ... ttttttgcagCTACAACATTAACTGGCTTGCATTTTGTTACCACAACCTTGATGACGGCTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcatgatgctcatcatttgtttgttttgaattttaattactttaattttttgcagCTACAACATTAACTGGCTTGCATTTTGTTACCACAACCTTGATGACGGCTATTCTTAGGTGGCTTGGATACATCCAACCCTCTCATCTCCCCCTTCCAGA
ttttttgc CT-rich tract
atcatttgtttgtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agaatgtttatttcaatatatatatatatatattggtagcaataagcatgatgctcatcatttgtttgttttgaattttaattactttaattttttgcagCTACAACATTAACTGGCTTGCATTTTGTTACCACAACCTTGATGACGGCTATTCTTAGGTGGCTTGGATACATCCAACCCTCTCATCTCCCCCTTCCAGA
- - - - - - - - - - - - - - - - - - - gcaataa
- - - - - - - - - - - - - - - - - - - - - - -gcatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - -ctcatca