Sequence
atgc intronic sequence ATGC exonic sequence...atagtttagccattgaagattatgattttgtatagcctatcaaaatctcaaaaatcaggcagctgatacattgaaatgtttgctaacttcattgtttcagGTGGTTGTGGTGCTTGTGTTGTTCTACTGTCCAAGTATAACCCTGTGCATGACCAGGTGGATGATTGTACGGTGAGTTCATGTCTTACCCTGCTTTGTAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0041g02410.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G44000.1 (Glycine max), 3'ss of exon 1
-----atagtttagccattgaagattatgattttgtatagcctatcaaaatctcaaaaatcaggcag--ctgatacattgaaatgtttgctaacttcattgtttcagGTGGTTGTGGTGCTTGTGTTGTTCTACTGTCCAAGTATAACCCTGTGCATGACCAGGTGGATGATTGTACGGTGAGTTCATGTCTTACCCTGCTTTGTAG
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ttctgatggttttatcatgaaa----acgaaggtggagaaggtgttggcct-tcagtgatcctccaaatcttttcaaatcagaagttcatt--tttgtttgtttcagGTGGTTGTGGTGCTTGCGTAGTTTTAATCTCCAAATATGATCCTGTGCATGACAGAGTTGAGGATTTTACGGCAAGCTCTTGTCTCACACTACTTTGCAG
upper sequence: Vv18s0041g02410.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT3G43600.1 (Arabidopsis thaliana), 3'ss of exon 1
atagtttagccattgaagattatgattttgtatagcctatcaaaatctcaaaaatcaggcagctgatacattgaaatgtttgctaacttcattgtttcagGTGGTTGTGGTGCTTGTGTTGTTCTACTGTCCAAGTATAACCCTGTGCATGACCAGGTGGATGATTGTACGGTGAGTTCATGTCTTACCCTGCTTTGTAG
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------------gtgattgctttgttttttatcctttcttcttactctttatggttctttgtctgata--ttattgtgtttgtt-------ttggttcagGAGGATGTGGTGCTTGTGTTGTTCTTCTCTCCAAGTTCGATCCTGTCTTACAAAAAGTCGAAGATTTCACTGTGAGCTCTTGTCTTACACTCCTCTGCAG
upper sequence: Vv18s0041g02410.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT5G20960.2 (Arabidopsis thaliana), 3'ss of exon 1
atagtttagccattgaagattatgattttgtatagcctatcaaaatctcaaaaatcaggcagctgatacattgaaatgtttgctaacttcattgttt---cagGTGGTTGTGGTGCTTGTGTTGTTCTACTGTCCAAGTATAACCCTGTGCATGACCAGGTGGATGATTGTACGGTGAGTTCATGTCTTACCCTGCTTTGTAG
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---ttagaattatggtctattagtagtctattcaattcatgagtgaataaacacccctaaagcttgggtcctaagttatattgtatcttctttgtgtgtgcagGTGGTTGTGGCGCTTGTGTTGTTCTTCTTTCAAAGTATGATCCATTGCTCGAAAAAGTCGATGAATTCACAATTAGCTCGTGTCTCACGCTTCTCTGTAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctcaaaaatcaggcagctgatacattgaaatgtttgctaacttcattgtttcagGTGGTTGTGGTGCTTGTGTTGTTCTACTGTCCAAGTATAACCCTGTGCATGACCAGGTGGATGATTGTACGGTGAGTTCATGTCTTACCCTGCTTTGTAG
tgctaac putative branch site (score: 1)
cttcatt CT-rich tract
attgaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atagtttagccattgaagattatgattttgtatagcctatcaaaatctcaaaaatcaggcagctgatacattgaaatgtttgctaacttcattgtttcagGTGGTTGTGGTGCTTGTGTTGTTCTACTGTCCAAGTATAACCCTGTGCATGACCAGGTGGATGATTGTACGGTGAGTTCATGTCTTACCCTGCTTTGTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - -ttagcca
- - - - - - - - - - - - - - - - - - - - caaaatc
- - - - - - - - - - - - - - - - - - - - - - - - -aaaaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgc