Sequence
atgc intronic sequence ATGC exonic sequence...tacacattcaagattatgattctgtatagcccatcaaaaccctaaaaaaaaaaagaaggttgctgatatcttgatatgttttctaactttattgtttcagGTGGTTGTGGTGCTTGCGTTGTCCTACTTTCCAAGTATAATCCTGTGCTTGACCAGGTGGATGATTTTACCGTGAGTTCATGTCTTACCCTGCTTTGTAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0041g02400.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G44000.1 (Glycine max), 3'ss of exon 1
-------tacacattcaagattatgattctgtatagcccatcaaaaccctaaaaaaaaaaagaaggttgctgatatcttgatatgttttctaactttattgtttcagGTGGTTGTGGTGCTTGCGTTGTCCTACTTTCCAAGTATAATCCTGTGCTTGACCAGGTGGATGATTTTACCGTGAGTTCATGTCTTACCCTGCTTTGTAG
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ttctgatggttttatcatgaaaacgaaggtggagaaggtgttgg--ccttcagtgatcctccaaatcttttcaaatc---agaagttcatt--tttgtttgtttcagGTGGTTGTGGTGCTTGCGTAGTTTTAATCTCCAAATATGATCCTGTGCATGACAGAGTTGAGGATTTTACGGCAAGCTCTTGTCTCACACTACTTTGCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaaaaaaaagaaggttgctgatatcttgatatgttttctaactttattgtttcagGTGGTTGTGGTGCTTGCGTTGTCCTACTTTCCAAGTATAATCCTGTGCTTGACCAGGTGGATGATTTTACCGTGAGTTCATGTCTTACCCTGCTTTGTAG
ttctaac putative branch site (score: 1)
ctttatt CT-rich tract
ttttctaactttatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tacacattcaagattatgattctgtatagcccatcaaaaccctaaaaaaaaaaagaaggttgctgatatcttgatatgttttctaactttattgtttcagGTGGTTGTGGTGCTTGCGTTGTCCTACTTTCCAAGTATAATCCTGTGCTTGACCAGGTGGATGATTTTACCGTGAGTTCATGTCTTACCCTGCTTTGTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- cacattc
- - - - - - - - - - - - - - - ccatcaa
- - - - - - - - - - - - - - - - - - - -ccctaaa
- - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgat