1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tatttcaactgaagtctggccgggaatccacaacttattttcttattttaaaaggctgattgactgatgtagtcagtatttaaatcatctcactgtgcagGGCAGCTGCTATTGGTGCTTCAGCTAGTCATGGGATCATTGGTACACATGATGGACTTGTGTACATGTGGGAATTGTCTACCGGTACTAAGCTTGGCAGT
species | Vitis vinifera |
transcript | Vv18s0041g00960.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
ttttaaaaggctgattgactgatgtagtcagtatttaaatcatctcactgtgcagGGCAGCTGCTATTGGTGCTTCAGCTAGTCATGGGATCATTGGTACACATGATGGACTTGTGTACATGTGGGAATTGTCTACCGGTACTAAGCTTGGCAGT
atctcac putative branch site (score: 3)
tcatctc CT-rich tract
agtatttaaatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatttcaactgaagtctggccgggaatccacaacttattttcttattttaaaaggctgattgactgatgtagtcagtatttaaatcatctcactgtgcagGGCAGCTGCTATTGGTGCTTCAGCTAGTCATGGGATCATTGGTACACATGATGGACTTGTGTACATGTGGGAATTGTCTACCGGTACTAAGCTTGGCAGT
- - - - -tgaagtc
- - - - - - - - tggccgg
- - - - - - - - - - - - - -ccacaac
- - - - - - - - - - - - - - - - - - - - - - - - -aaaaggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgactga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatcat