Sequence
atgc intronic sequence ATGC exonic sequence...ttgaaacttaaattaacaagctaaagcaactgggtcacttagagctctctctgttgtaaagtgaactgtcaccttgattagtaaagatgtgctcagacagGTTGGAGGACATACCGGAGACCGGATGAAAAATCTGGAGGCCATGGTGTTGGATGGAGTCCGATTATTCCTTACATCTTTTCAGTCCCTTCTGGTTGGGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g15360.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA06G12760.1 (Glycine max), 3'ss of exon 1
ttgaaacttaaattaacaagctaaagca---actgggtcacttagagctctctctgttgtaaagtgaactgtcaccttgattagtaaagatgtgctcagacagGTTGGAGGACATACCGGAGACCGGATGAAAAATCTGGAGGCCATGGTGTTGGATGGAGTCCGATTATTCCTTACATCTTTTCAGTCCCTTCTGGTTGGGA
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--taggcaaatgttagtttggtagaatgttcattttgttagtagagaagatcaagattttaaatgaaagtgacataatg-taggcaagcatttgatcagacagGTTGGAGGACGTATCGCAGGCCGGATGAGAAGTCTGGAGGACATGGTGTTGGATGGAGTCCTATTATTCCATACAGCTTCAGAGTGCCCAAAGAATGGGA
upper sequence: Vv18s0001g15360.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA04G42010.1 (Glycine max), 3'ss of exon 1
ttgaaacttaaattaacaagctaaag---caactgggtcacttagagctctctctgttgtaaagtgaactgtcaccttgattagtaaagatgtgctcagacagGTTGGAGGACATACCGGAGACCGGATGAAAAATCTGGAGGCCATGGTGTTGGATGGAGTCCGATTATTCCTTACATCTTTTCAGTCCCTTCTGGTTGGGA
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--tcgacaaatgttagtttgttggagtgtcagttttgttaatagagaggatcaagatctttaatgaaagtgacataatg-taggcaagtatttgatcagacagGTTGGAGGACCTATCGCAGGCCGGATGAGAAGTCAGGAGGACATGGTGTTGGATGGAGTCCTATTATTCCATACAGCTTCAGAGTGCCTGAAGAATGGGA
upper sequence: Vv18s0001g15360.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT1G77090.1 (Arabidopsis thaliana), 3'ss of exon 1
ttgaaacttaaattaacaagctaaagcaactgggtcacttagagctctctctgttgtaaagtgaactgtcacct--tgat-tagtaaagatgt---gctcagacagGTTGGAGGACATACCGGAGACCGGATGAAAAATCTGGAGGCCATGGTGTTGGATGGAGTCCGATTATTCCTTACATCTTTTCAGTCCCTTCTGGTTGGGA
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------cataaatctttaggctttggacattgattcttggagttgtattatgacagtatagtagttgggaatttgttggtgtaatgtaattgtaatgctcagacagGTTGGAGAACATACCGTAGACCAGACGAGAAGTCAGGAGGGCATGGTGTTGGTTGGAGTCCTATTATCCCTTACGCCTTTTCGGTTCCTCAAGATTGGAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110731146|gb|EE109038.1|EE109038EST: AGGCCTCCTAGCAGGAAGGGTACCTGGTCTATCTGAGCCAGATGAACAAG GTTGGAGGACATACCGGAGACCGGATGAAAAATCTGGAGGCCATGGTGTTG
genomic: AGGCCTCCTAGCAGGAAGGGTACCTGGTCTATCTGAGCCAGATGAACAAGgttggtttca ... gctcagacagGTTGGAGGACATACCGGAGACCGGATGAAAAATCTGGAGGCCATGGTGTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctctctgttgtaaagtgaactgtcaccttgattagtaaagatgtgctcagacagGTTGGAGGACATACCGGAGACCGGATGAAAAATCTGGAGGCCATGGTGTTGGATGGAGTCCGATTATTCCTTACATCTTTTCAGTCCCTTCTGGTTGGGA
ccttgat putative branch site (score: 5)
attagtaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttgaaacttaaattaacaagctaaagcaactgggtcacttagagctctctctgttgtaaagtgaactgtcaccttgattagtaaagatgtgctcagacagGTTGGAGGACATACCGGAGACCGGATGAAAAATCTGGAGGCCATGGTGTTGGATGGAGTCCGATTATTCCTTACATCTTTTCAGTCCCTTCTGGTTGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - -aaattaa
- - - - - - - - - - - aaagcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtcacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaaaga