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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcatgtttaaatattgatgggaatttgatgttcttctcggggttcttgtttttcttttgtttcttctggaacttacgacatgggttttgtttctgcagTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATTAAAGCTCAGGTCACTACAGAGGCTCCTGCAAAAGTAGAGAAGGTTTCTA

Basic information

species Vitis vinifera
transcript Vv18s0001g14450.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110372040|gb|EC936182.1|EC936182
EST:     TAACTTCAATAAG                         TGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
genomic: TAACTTCAATAAGgcatgtttaa ... gtttctgcagTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
EST: gi|351046424|gb|FQ453040.1|FQ453040
EST:     CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAG                         TGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
genomic: CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAGgcatgtttaa ... gtttctgcagTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
EST: gi|349811782|gb|FQ410579.1|FQ410579
EST:     CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAG                         TGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
genomic: CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAGgcatgtttaa ... gtttctgcagTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
EST: gi|351044400|gb|FQ452952.1|FQ452952
EST:     CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAG                         TGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
genomic: CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAGgcatgtttaa ... gtttctgcagTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
EST: gi|351045818|gb|FQ441003.1|FQ441003
EST:     CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAG                         TGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
genomic: CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAGgcatgtttaa ... gtttctgcagTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
EST: gi|351046370|gb|FQ452986.1|FQ452986
EST:     CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAG                         TGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
genomic: CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAGgcatgtttaa ... gtttctgcagTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
EST: gi|351052122|gb|FQ455415.1|FQ455415
EST:     CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAG                         TGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
genomic: CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAGgcatgtttaa ... gtttctgcagTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
EST: gi|351042242|gb|FQ442709.1|FQ442709
EST:     CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAG                         TGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
genomic: CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAGgcatgtttaa ... gtttctgcagTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
EST: gi|351019671|gb|FQ439488.1|FQ439488
EST:     CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAG                         TGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
genomic: CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAGgcatgtttaa ... gtttctgcagTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
EST: gi|351055385|gb|FQ441983.1|FQ441983
EST:     CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAG                         TGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
genomic: CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAGgcatgtttaa ... gtttctgcagTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
EST: gi|349825116|gb|FQ415663.1|FQ415663
EST:     CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAG                         TGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
genomic: CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAGgcatgtttaa ... gtttctgcagTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
EST: gi|351039066|gb|FQ457741.1|FQ457741
EST:     CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAG                         TGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
genomic: CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAGgcatgtttaa ... gtttctgcagTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
EST: gi|351057238|gb|FQ450945.1|FQ450945
EST:     CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAG                         TGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
genomic: CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAGgcatgtttaa ... gtttctgcagTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
EST: gi|351044758|gb|FQ449012.1|FQ449012
EST:     CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAG                         TGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
genomic: CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAGgcatgtttaa ... gtttctgcagTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
EST: gi|349816231|gb|FQ403727.1|FQ403727
EST:     CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAG                         TGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
genomic: CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAGgcatgtttaa ... gtttctgcagTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
EST: gi|351055701|gb|FQ452166.1|FQ452166
EST:     CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAG                         TGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
genomic: CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAGgcatgtttaa ... gtttctgcagTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
EST: gi|351035786|gb|FQ463631.1|FQ463631
EST:     CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAG                         TGTTTCTTGTACTTGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
genomic: CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAGgcatgtttaa ... gtttctgcagTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
EST: gi|349811497|gb|FQ409493.1|FQ409493
EST:     CTATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAG                         TGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
genomic: CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAGgcatgtttaa ... gtttctgcagTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
EST: gi|349814907|gb|FQ410130.1|FQ410130
EST:     CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAG                         TGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
genomic: CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAGgcatgtttaa ... gtttctgcagTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
EST: gi|351045587|gb|FQ440772.1|FQ440772
EST:     CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAG                         TGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
genomic: CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAGgcatgtttaa ... gtttctgcagTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
EST: gi|351053728|gb|FQ441494.1|FQ441494
EST:     CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAG                         TGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
genomic: CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAGgcatgtttaa ... gtttctgcagTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
EST: gi|351056890|gb|FQ443517.1|FQ443517
EST:     CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAG                         TGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
genomic: CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAGgcatgtttaa ... gtttctgcagTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
EST: gi|349825028|gb|FQ415575.1|FQ415575
EST:     CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAG                         TGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
genomic: CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAGgcatgtttaa ... gtttctgcagTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
EST: gi|351053267|gb|FQ459135.1|FQ459135
EST:     CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAG                         TGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
genomic: CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAGgcatgtttaa ... gtttctgcagTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
EST: gi|351025508|gb|FQ435201.1|FQ435201
EST:     CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAG                         TGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
genomic: CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAGgcatgtttaa ... gtttctgcagTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
EST: gi|351044587|gb|FQ443118.1|FQ443118
EST:     CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAG                         TGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
genomic: CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAGgcatgtttaa ... gtttctgcagTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
EST: gi|110371343|gb|EC935294.1|EC935294
EST:     CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAG                         TGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
genomic: CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAGgcatgtttaa ... gtttctgcagTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
EST: gi|351045767|gb|FQ440952.1|FQ440952
EST:     CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAG                         TGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
genomic: CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAGgcatgtttaa ... gtttctgcagTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
EST: gi|349829231|gb|FQ419763.1|FQ419763
EST:     CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAG                         TGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
genomic: CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAGgcatgtttaa ... gtttctgcagTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
EST: gi|349810724|gb|FQ402967.1|FQ402967
EST:     CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAG                         TGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
genomic: CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAGgcatgtttaa ... gtttctgcagTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
EST: gi|349812990|gb|FQ411230.1|FQ411230
EST:     CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAG                         TGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
genomic: CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAGgcatgtttaa ... gtttctgcagTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
EST: gi|110379774|gb|EC944993.1|EC944993
EST:     CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAG                         TGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
genomic: CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAGgcatgtttaa ... gtttctgcagTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
EST: gi|349821990|gb|FQ408319.1|FQ408319
EST:     CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAG                         TGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
genomic: CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAGgcatgtttaa ... gtttctgcagTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
EST: gi|349825115|gb|FQ415662.1|FQ415662
EST:     CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAG                         TGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
genomic: CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAGgcatgtttaa ... gtttctgcagTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
EST: gi|351031903|gb|FQ460160.1|FQ460160
EST:     CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAG                         TGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
genomic: CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAGgcatgtttaa ... gtttctgcagTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
EST: gi|351040458|gb|FQ434591.1|FQ434591
EST:     CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAG                         TGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
genomic: CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAGgcatgtttaa ... gtttctgcagTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
EST: gi|351052706|gb|FQ453814.1|FQ453814
EST:     CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAG                         TGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
genomic: CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAGgcatgtttaa ... gtttctgcagTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
EST: gi|349817775|gb|FQ407764.1|FQ407764
EST:     CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAG                         TGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
genomic: CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAGgcatgtttaa ... gtttctgcagTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
EST: gi|352794268|gb|FQ479510.1|FQ479510
EST:     CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAG                         TGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT
genomic: CCATCAGAAACCATATAATAGTCTCCCCAGAAAGAATTAACTTCAATAAGgcatgtttaa ... gtttctgcagTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttgtttttcttttgtttcttctggaacttacgacatgggttttgtttctgcagTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATTAAAGCTCAGGTCACTACAGAGGCTCCTGCAAAAGTAGAGAAGGTTTCTA
                          aacttac  putative branch site (score: 2)
                                         ttttgtttct  putative PPT
     tttttcttttgttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcatgtttaaatattgatgggaatttgatgttcttctcggggttcttgtttttcttttgtttcttctggaacttacgacatgggttttgtttctgcagTGTTTCTTGTACTCGAGAAACGTCTGTGTTGGCCGGAAAGTAGTTACCATTAAAGCTCAGGTCACTACAGAGGCTCCTGCAAAAGTAGAGAAGGTTTCTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA