1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...agaatttttgcacccattgttggttgttctaatatgttagagattatttgttgtgaattgtcttgccaccttgccttacatgcttctttaatgatagcagTTCACAATGGAAATGACTGGCACTGGGGCTCCTAATATGCCAAAAAGTTACTCCTTGAATATGTTCAAAGATTTTGTTCCTATGTGTGTTTTTTCTGAGA
species | Vitis vinifera |
transcript | Vv18s0001g13370.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGTCCTCTCCCTCGATCCTCTCCGCTCCGAAGATCCCTCTGCGCTGGAG TTCACAATGGAAATGACTGGCACTGGGGCTCCTAATATGCCAAAAAGTTACEST: gi|33410257|gb|CF215884.1|CF215884
genomic: TCGTCCTCTCCCTCGATCCTCTCCGCTCCGAAGATCCCTCTGCGCTGGAGgtacctttcc ... atgatagcagTTCACAATGGAAATGACTGGCACTGGGGCTCCTAATATGCCAAAAAGTTAC
EST: TCGTCCTCTCCCTCGATCCTCTCCGCTCCGAAGATCCCTCTGCGCTGGAG TTCACAATGGAAATGACTGGCACTGGGGCTCCTAATATGCCAAAAAGTTACEST: gi|71876173|gb|DT025228.1|DT025228
genomic: TCGTCCTCTCCCTCGATCCTCTCCGCTCCGAAGATCCCTCTGCGCTGGAGgtacctttcc ... atgatagcagTTCACAATGGAAATGACTGGCACTGGGGCTCCTAATATGCCAAAAAGTTAC
EST: TCGTCCTCTCCCTCGATCCTCTCCGCTCCGAAGATCCCTCTGCGCTGGAG TTCACAATGGAAATGACTGGCACTGGGGCTCCTAATATGCCAAAAAGTTACEST: gi|110713762|gb|EE089967.1|EE089967
genomic: TCGTCCTCTCCCTCGATCCTCTCCGCTCCGAAGATCCCTCTGCGCTGGAGgtacctttcc ... atgatagcagTTCACAATGGAAATGACTGGCACTGGGGCTCCTAATATGCCAAAAAGTTAC
EST: TCGTCCTCTCCCTCGATCCTCTCCGCTCCGAAGATCCCTCTGCGCTGGAG TTCACAATGGAAATGACTGGCACTGGGGCTCCTAATATGCCAAAAAGTTACEST: gi|110702596|gb|EE081122.1|EE081122
genomic: TCGTCCTCTCCCTCGATCCTCTCCGCTCCGAAGATCCCTCTGCGCTGGAGgtacctttcc ... atgatagcagTTCACAATGGAAATGACTGGCACTGGGGCTCCTAATATGCCAAAAAGTTAC
EST: CTGCGCTGGAG TTCACAATGGAAATGACTGGCACTGGGGCTCCTAATATGCCAAAAAGTTAC
genomic: CTGCGCTGGAGgtacctttcc ... atgatagcagTTCACAATGGAAATGACTGGCACTGGGGCTCCTAATATGCCAAAAAGTTAC
atttgttgtgaattgtcttgccaccttgccttacatgcttctttaatgatagcagTTCACAATGGAAATGACTGGCACTGGGGCTCCTAATATGCCAAAAAGTTACTCCTTGAATATGTTCAAAGATTTTGTTCCTATGTGTGTTTTTTCTGAGA
tttaatgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaatttttgcacccattgttggttgttctaatatgttagagattatttgttgtgaattgtcttgccaccttgccttacatgcttctttaatgatagcagTTCACAATGGAAATGACTGGCACTGGGGCTCCTAATATGCCAAAAAGTTACTCCTTGAATATGTTCAAAGATTTTGTTCCTATGTGTGTTTTTTCTGAGA
- - - - -gcaccca
- - - - - - - - - - tggttgt
- - - - - - - - - - - - - - - - - - - - - - - - tgttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgct