1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cacagttaagattttaattgatgtataattctttatgaagtttctctaccatgcttgattttgtttttattttttataattcttcatacatctttaacagGCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCATAATTGTTTTAAAGAGACTGTGGAATCATTTATTTCTTGTACTGGGATGA
species | Vitis vinifera |
transcript | Vv18s0001g13280.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TACATAAGCGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCT GCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCATEST: gi|349813259|gb|FQ411499.1|FQ411499
genomic: TACATAAGTGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCTgtaagttctt ... tctttaacagGCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
EST: TACATAAGCGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCT GCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCATEST: gi|27585579|gb|CB008274.1|CB008274
genomic: TACATAAGTGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCTgtaagttctt ... tctttaacagGCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
EST: TACATAAGCGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCT GCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCATEST: gi|110713521|gb|EE089516.1|EE089516
genomic: TACATAAGTGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCTgtaagttctt ... tctttaacagGCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
EST: TACATAAGCGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCT GCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCATEST: gi|32246127|gb|CD711946.1|CD711946
genomic: TACATAAGTGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCTgtaagttctt ... tctttaacagGCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
EST: TACATAAGCGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCT GCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCATEST: gi|110718275|gb|EE094924.1|EE094924
genomic: TACATAAGTGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCTgtaagttctt ... tctttaacagGCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
EST: TACATAAGCGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCT GCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCATEST: gi|294965909|gb|GW839248.1|GW839248
genomic: TACATAAGTGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCTgtaagttctt ... tctttaacagGCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
EST: TACATAAGCGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCT GCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCATEST: gi|349820159|gb|FQ404881.1|FQ404881
genomic: TACATAAGTGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCTgtaagttctt ... tctttaacagGCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
EST: TACATAAGCGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCT GCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCATEST: gi|349807500|gb|FQ401493.1|FQ401493
genomic: TACATAAGTGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCTgtaagttctt ... tctttaacagGCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
EST: TACATAAGCGGCGAATGATGGGCGTAGATCCGCGTCAATACGAAAATGCT GCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCATEST: gi|110712714|gb|EE088002.1|EE088002
genomic: TACATAAGTGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCTgtaagttctt ... tctttaacagGCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
EST: TACATAAGCGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCT GCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCATEST: gi|351013733|gb|FQ433885.1|FQ433885
genomic: TACATAAGTGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCTgtaagttctt ... tctttaacagGCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
EST: TACATAAGCGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCT GCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCATEST: gi|71889960|gb|DT039015.1|DT039015
genomic: TACATAAGTGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCTgtaagttctt ... tctttaacagGCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
EST: TACATAAGCGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCT GCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCATEST: gi|71883071|gb|DT032126.1|DT032126
genomic: TACATAAGTGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCTgtaagttctt ... tctttaacagGCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
EST: TACATAAGCGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCT GCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCATEST: gi|349815412|gb|FQ400567.1|FQ400567
genomic: TACATAAGTGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCTgtaagttctt ... tctttaacagGCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
EST: TACATAAGCGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCT GCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCATEST: gi|71886496|gb|DT035551.1|DT035551
genomic: TACATAAGTGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCTgtaagttctt ... tctttaacagGCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
EST: TACATAAGCGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCT GCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
genomic: TACATAAGTGGCGAATGATGGACGTAGATCCGCGTCAATACGAAAATGCTgtaagttctt ... tctttaacagGCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCAT
ctaccatgcttgattttgtttttattttttataattcttcatacatctttaacagGCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCATAATTGTTTTAAAGAGACTGTGGAATCATTTATTTCTTGTACTGGGATGA
gcttgat putative branch site (score: 5)
catcttt putative PPT
attttgtttttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacagttaagattttaattgatgtataattctttatgaagtttctctaccatgcttgattttgtttttattttttataattcttcatacatctttaacagGCTATCAATGACAGTGACATCCACAACATTGTCCTATCATATCTTGTGCATAATTGTTTTAAAGAGACTGTGGAATCATTTATTTCTTGTACTGGGATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - ccatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcataca