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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataatatatgtgttgttcttccttgctcattgacagtacagtttgttaattctaatagcgtttttcctccgtgttcagGCGAGGGGTTCTTGTGAAAGAATCGGAGACAGCAGGGGGTGAACCTATAGATATCACCCCCAAAGAGTTTTCAGTGCGGACAGTTGCTCAAGAGTATGGA

Basic information

species Vitis vinifera
transcript Vv18s0001g11150.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352768448|gb|FQ469624.1|FQ469624
EST:     GATGGTGACGGCCGACTCATCTGGCTCGAGACTCGCCCTACTGAATCAGG                         GCGAGGGGTTCTTGTGAAAGAATCGGAGACAGCAGGGGGTGAACCTATAGA
genomic: GATGGTGACGGCCGACTCATCTGGCTCGAGACTCGCCCTACTGAATCAGGgtataatata ... ccgtgttcagGCGAGGGGTTCTTGTGAAAGAATCGGAGACAGCAGGGGGTGAACCTATAGA
EST: gi|352777273|gb|FQ473907.1|FQ473907
EST:     GATGGTGACGGCCGACTCATCTGGCTCGAGACTCGCCCTACTGAATCAGG                         GCGAGGGGTTCTTGTGAAAGAATCGGAGACAGCAGGGGGTGAACCTATAGA
genomic: GATGGTGACGGCCGACTCATCTGGCTCGAGACTCGCCCTACTGAATCAGGgtataatata ... ccgtgttcagGCGAGGGGTTCTTGTGAAAGAATCGGAGACAGCAGGGGGTGAACCTATAGA
EST: gi|71860181|gb|DT009236.1|DT009236
EST:     GATGGTGACGGCCGACTCATCTGGCTCGAGACTCGCCCTACTGAATCAGG                         GCGAGGGGTTCTTGTGAAAGAATCGGAGACAGCAGGGGGTGAACCTATAGA
genomic: GATGGTGACGGCCGACTCATCTGGCTCGAGACTCGCCCTACTGAATCAGGgtataatata ... ccgtgttcagGCGAGGGGTTCTTGTGAAAGAATCGGAGACAGCAGGGGGTGAACCTATAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctcattgacagtacagtttgttaattctaatagcgtttttcctccgtgttcagGCGAGGGGTTCTTGTGAAAGAATCGGAGACAGCAGGGGGTGAACCTATAGATATCACCCCCAAAGAGTTTTCAGTGCGGACAGTTGCTCAAGAGTATGGA
                          ttctaat  putative branch site (score: 2)
                                     tttttcctccgtgttc  putative PPT
                  tttgttaattctaata  TA-rich tract