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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacatcttgacgccaagacaagttttatttcaattttagggctgctttgtgatttttttattcgcatcacttccaaaccctaattagggtttttcaatttgttttcttttgatttggggattgggaataatagGGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCGTTGATGAGTACACAGTTCGTGTAGTAGATGTGTTCGCGATGCCGCAGAG

Basic information

species Vitis vinifera
transcript Vv18s0001g10820.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g10820.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA14G08940.1 (Glycine max), 3'ss of exon 1
gtaacatcttgacgccaagacaagttttatttcaattttagggctgctttgtgatttttttattcgcatcacttccaaaccctaattagggtttttcaatttgttttcttttgatttggggattgggaata-----atagGGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCGTTGATGAGTACACAGTTCGTGTAGTAGATGTGTTCGCGATGCCGCAGAG
                              | |  | ||||   |  | | |  | || |   || | |||||     ||  |   |  | ||||     || || |||  | ||||    |     |||       |||| |||||||| || ||||||||||| |||||||||||| |||| |||||||| ||||||||||| ||||| || || |||||||| |||||||| |||||
-----------------------------gtacgctattagaattcttcttttctcttctcgatcccttcactggtccacttttcctttgtttttg----tttttgtctgataattttcaaaaccctaatttctgtgtagGAAGAGCTGGGGTACCCATGGAAGTGATGGGTCTGATGTTGGGGGAGTTCGTGGATGAGTACACCGTTCGCGTTGTGGATGTGTTTGCGATGCCTCAGAG

upper sequence: Vv18s0001g10820.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA17G36230.1 (Glycine max), 3'ss of exon 1
gtaacatcttgacgccaagacaagttttatttcaatt-ttagggctgctttgtgatttttttattcgcatcacttccaaaccctaattagggtttttcaatttgttttcttttgatttggggattgggaataatagGGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCGTTGATGAGTACACAGTTCGTGTAGTAGATGTGTTCGCGATGCCGCAGAG
                        |  ||||  |||| |||      |||   |||    || ||||  |||||| |  |   |  ||    || ||||  || |  | ||   |        ||| |  ||   || ||||||||||| || |||||||| |||||||||||| |||| |||||||| ||||||||||| ||||| || || |||||||| |||||||| |||| 
--------------------ggtatgctattagaattcttattttctcttctcgatccccttcttcgtttcactttcccatgtttttttta-ttgttcatcttataattttgaaaaccctaatttgtgtgta-

upper sequence: Vv18s0001g10820.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA15G09410.1 (Glycine max), 3'ss of exon 1
gtaacatcttgacgccaagacaagttttatttcaattttagggctgctttgtgatttttttattcgcatcacttccaaaccctaattagggtttttcaatttgttttcttttgatttggggattgggaataatagGGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCGTTGATGAGTACACAGTTCGTGTAGTAGATGTGTTCGCGATGCCGCAGAG
                               | || |  |    |      |  ||    || |||  |||  |      ||  ||||         |||| |  || |  || ||| |  ||||        ||| || ||||| |||||||||||||| |||||| ||||||| ||||| ||||| || |||||||| |||||||| || ||||| ||||| |||||||||||
------------------------------gtaaagtccaaaagtttccgttttttagcctaatcgagtca--tggggtacccgattacaa------aattagggttttcgtgtttttgtaattg-------cagGAAGGGCTGGGGTTCCCATGGAAGTGATGGGTTTGATGCTTGGAGAATTCGTGGACGAGTACACCGTTCGTGTGGTTGATGTCTTCGCAATGCCGCAGAG

upper sequence: Vv18s0001g10820.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA13G29660.1 (Glycine max), 3'ss of exon 1
gtaacatcttgacgccaagacaagttttatttcaattttagggctgctttgtgatttttttattcgcatcacttccaaaccctaattagggtttttcaatttgttttcttttgatttggggattgggaataatagGGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCGTTGATGAGTACACAGTTCGTGTAGTAGATGTGTTCGCGATGCCGCAGAG
                               | | |   |  | | |  | |  ||    || |||  ||| |     ||||       | ||| | |||| |  || |  || ||  |  ||||        ||| || ||||| ||||||||||| || |||||| ||||||| ||||| ||||| || |||||||| |||||||| || ||||| ||||| |||||||||||
------------------------------gtaagtccaaaagttcccgttt--ttaacctaatcgagtca-tggagtaccc-------gatttctaaattagggttttcgtgtttctgtaattg-------cagGAAGGGCTGGGGTTCCCATGGAGGTGATGGGTTTGATGCTTGGAGAATTCGTGGACGAGTACACCGTTCGTGTGGTTGATGTCTTCGCAATGCCGCAGAG

upper sequence: Vv18s0001g10820.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: PP1S181_105V6.1 (Physcomitrella patens), 3'ss of exon 2
gtaacatcttgacgccaagacaagttttatttcaattttagggctgctttgtgatttttttattcgcatcacttccaaaccctaattagggtttttcaattt--gttttcttttgatttggggattgggaataatagGGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCGTTGATGAGTACACAGTTCGTGTAGTAGATGTGTTCGCGATGCCGCAGAG
                         ||||  |   ||||   | |  | |    || |  |    |  || ||| ||     | ||||  ||  |  |||||     |  ||| ||||| ||   |   |     ||| ||||||||||| |||||||| || ||||| |||||||| |  ||||| |||||||| ||||||||| |||| ||  |||||||||| ||||| || ||
-------------------------tttaccttcgttttcatgttcttat----ttgtcctggaggtctctcttgca-----tgattacagtagtataattttaacctggtttcgattttggacat---atctgcagGTAGAGCTGGAGTACCCATGGAGGTGATGGGGCTGATGCTTGTGGAGTTTGTTGATGAATACACAGTTTGTGTTGTGAATGTGTTCGCTATGCCTCAAAG

upper sequence: Vv18s0001g10820.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: PP1S46_324V6.1 (Physcomitrella patens), 3'ss of exon 1
gtaacatcttgacgccaagacaagttttatttcaattttagggctgctttgtgatttttttattcgcatcacttccaaaccctaattagggttt---ttcaatttgttttcttttgatttggg-gattgggaataatagGGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCGTTGATGAGTACACAGTTCGTGTAGTAGATGTGTTCGCGATGCCGCAGAG
                           ||  | |   || || ||  | | | |       |||   || |||| |    | |    |||| ||   ||||| ||| |  |     ||||||  ||| | |      ||| ||||||||||| || ||||| || ||||| |||||||| || |||||||| || |||||||| |||||||| || ||||| || || ||||| |||||
---------------------------tacattagggttcggtctattgtctaa----agaatttaaatgacttgctcttcgttgggagggcttggattcaaattggtgaca---aatttggacgatcgtg-----cagGTAGAGCTGGAGTGCCTATGGAGGTGATGGGGCTGATGCTTGGGGAGTTCGTGGACGAGTACACTGTTCGTGTTGTGGATGTATTTGCTATGCCACAGAG

upper sequence: Vv18s0001g10820.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: EFJ16494 (Selaginella moellendorffii), 3'ss of exon 1
gtaacatcttgacgccaagacaagttttatttcaattttagggctgctttgtgatttttttattcgcatcacttccaaaccctaattagggtttttcaatttgttttct--tttgatttggggattgggaataatagGGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCGTTGATGAGTACACAGTTCGTGTAGTAGATGTGTTCGCGATGCCGCAGAG
                                     || |   |||  ||    |   |      |     |   |   | | |||   ||||||   |||| |||     || |  | |  | | ||  |   |||  ||||||| || || |||||||| |||||||| ||||| || || || || ||||||||||| || || ||  | ||||| |||||||||||||||||
-------------------------------------tttgccatgccatggtgctcgatcccatactcgtttcttagttctttattcttgttttttcctttggtttgaaacttaaccttgctacttggttttccagGACGAGCTGGTGTGCCAATGGAAGTTATGGGTCTCATGCTAGGTGATTTTGTGGATGAGTACACTGTCCGGGTCATCGATGTTTTCGCGATGCCGCAGAG

upper sequence: Vv18s0001g10820.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: EFJ37436 (Selaginella moellendorffii), 3'ss of exon 1
gtaacatcttgacgccaagacaagttttatttcaattttagggctgctttgtgatttttttattcgcatcacttccaaaccctaattagggtttttcaatttgttttcttttgatttggggattgggaataatagGGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCGTTGATGAGTACACAGTTCGTGTAGTAGATGTGTTCGCGATGCCGCAGAG
                                                                             ||        || | |   || |||   | ||   | |||| |  |      |   ||||||||||||||| ||||||||||||||||| |||||||| || || || || || |||||||| ||||| || || || || || |||||||| |||||
---------------------------------------------------------------------------gtaaggagggagagagctccgcatttt-cgtgctagagctttgcgcttc---tttcgcagGGAGAGCTGGAGTCCCCATGGAAGTCATGGGACTGATGCTTGGGGACTTTGTGGACGAGTACACTGTTCGCGTGGTGGACGTCTTTGCGATGCCTCAGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161715964|gb|FC067142.1|FC067142
EST:     GGAGCAGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACG                         GGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCG
genomic: GGAGCAGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACGgtaacatctt ... ggaataatagGGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCG
EST: gi|71875919|gb|DT024974.1|DT024974
EST:     GGAGCAGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACG                         GGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCG
genomic: GGAGCAGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACGgtaacatctt ... ggaataatagGGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCG
EST: gi|110700849|gb|EE077863.1|EE077863
EST:     GGAGCAGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACG                         GGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCG
genomic: GGAGCAGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACGgtaacatctt ... ggaataatagGGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCG
EST: gi|110731528|gb|EE106018.1|EE106018
EST:     GGAGCAGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACG                         GGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGTTGGGAGAGTTCG
genomic: GGAGCAGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACGgtaacatctt ... ggaataatagGGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCG
EST: gi|26261606|gb|CA812669.1|CA812669
EST:     GGAGCAGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACG                         GGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCG
genomic: GGAGCAGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACGgtaacatctt ... ggaataatagGGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCG
EST: gi|161707958|gb|FC057779.1|FC057779
EST:     GGAGCAGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACG                         GGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCG
genomic: GGAGCAGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACGgtaacatctt ... ggaataatagGGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCG
EST: gi|351048672|gb|FQ448946.1|FQ448946
EST:     GGAGCAGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACG                         GGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCG
genomic: GGAGCAGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACGgtaacatctt ... ggaataatagGGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCG
EST: gi|161707390|gb|FC055194.1|FC055194
EST:     GGAGCAGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACG                         GGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCG
genomic: GGAGCAGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACGgtaacatctt ... ggaataatagGGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCG
EST: gi|110364691|gb|EC928133.1|EC928133
EST:     GGAGCAGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACG                         GGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCG
genomic: GGAGCAGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACGgtaacatctt ... ggaataatagGGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCG
EST: gi|161714686|gb|FC062666.1|FC062666
EST:     GGAGCAGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACG                         GGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCG
genomic: GGAGCAGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACGgtaacatctt ... ggaataatagGGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCG
EST: gi|349809860|gb|FQ398485.1|FQ398485
EST:     GGAGCAGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACG                         GGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCG
genomic: GGAGCAGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACGgtaacatctt ... ggaataatagGGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCG
EST: gi|110397855|gb|EC963800.1|EC963800
EST:     GGAGCAGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACG                         GGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCG
genomic: GGAGCAGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACGgtaacatctt ... ggaataatagGGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCG
EST: gi|351044771|gb|FQ449025.1|FQ449025
EST:     GGAGCAGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACG                         GGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCG
genomic: GGAGCAGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACGgtaacatctt ... ggaataatagGGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCG
EST: gi|30302146|gb|CB978940.1|CB978940
EST:     GGAGCAGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACG                         GGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCG
genomic: GGAGCAGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACGgtaacatctt ... ggaataatagGGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCG
EST: gi|349811487|gb|FQ409483.1|FQ409483
EST:     GGAGCAGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCCAACACG                         GGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCG
genomic: GGAGCAGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACGgtaacatctt ... ggaataatagGGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCG
EST: gi|46917963|gb|CN547292.1|CN547292
EST:     GGAGCAGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACG                         GGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCG
genomic: GGAGCAGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACGgtaacatctt ... ggaataatagGGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCG
EST: gi|351041787|gb|FQ455997.1|FQ455997
EST:     GGAGCGGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACG                         GGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCG
genomic: GGAGCAGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACGgtaacatctt ... ggaataatagGGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCG
EST: gi|351052596|gb|FQ456444.1|FQ456444
EST:     GGAGCAGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACG                         GGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCG
genomic: GGAGCAGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACGgtaacatctt ... ggaataatagGGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCG
EST: gi|294966821|gb|GW837840.1|GW837840
EST:     GGAGCAGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACG                         GGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGTTGGGAGAGTTCG
genomic: GGAGCAGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACGgtaacatctt ... ggaataatagGGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCG
EST: gi|26262771|gb|CA813834.1|CA813834
EST:     TACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACG                         GGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCG
genomic: TACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACGgtaacatctt ... ggaataatagGGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCG
EST: gi|37185413|gb|CF604766.1|CF604766
EST:     GGAGCAGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACG                         GGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCG
genomic: GGAGCAGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACGgtaacatctt ... ggaataatagGGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCG
EST: gi|351041956|gb|FQ456166.1|FQ456166
EST:     GGAGCGGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACG                         GGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCG
genomic: GGAGCAGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACGgtaacatctt ... ggaataatagGGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctaattagggtttttcaatttgttttcttttgatttggggattgggaataatagGGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCGTTGATGAGTACACAGTTCGTGTAGTAGATGTGTTCGCGATGCCGCAGAG
           tttttcaatttgtttt  TA-rich tract