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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcccattaccctaattattgatgataccttagtttgcgttgtattagtagccttttacgtaattttctttttcttctgctctcattattgtcgataccttagtttgcattgtattaggagcctaatttcttttattttattttattttttatggtgctcatgttgttgtttccgtttttatttttatggtggctagATGCTGGGCGAAAGTTTGTACCCTCTCGTGGATCAGCTGGAGCATGAGATGGCAGCCAAAGTGACAGGCATGCTTCTGGATATGGGCCAGACTGAGTTTT

Basic information

species Vitis vinifera
transcript Vv18s0001g10190.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g10190.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os08g22354.2 (Oryza sativa), 3'ss of exon 9
gtatgcccattaccctaattattgatgataccttagtttgcgttgtattagtagccttttacgtaattttctttttcttctgctctcattattgtcgataccttagtttgcattgtattaggagcctaatttcttttattttattttattttttatggtgctcatgttgttgtttccgtttttatttttatggtggctagATGCTGGGCGAAAGTTTGTACCCTCTCGTGGATCAGCTGGAGCATGAGATGGCAGCCAAAGTGACAGGCATGCTTCTGGATATGGGCCAGACTGAGTTTT
                                                                                                | || ||||   |   |  | ||| |  | ||      | ||    ||    ||   | |||  ||    |  |   ||||        | | ||||  || ||||||| || |||||||| ||||| || || |||||||||||||||||   |||||| || || || ||||||||| |||| |||| |||||||||  || 
------------------------------------------------------------------------------------------------gttagcttatcctttttgcttttatgcacatatgcggatctaagg-ataaatttcaatctggaactgggatcataacttcc--------tctcatggctgc-agATGCTTGGTGAAAGTTTATACCCGCTTGTTGATCAGCTGGAGCATGATCAGGCAGCGAAGGTCACTGGCATGCTTTTGGAGATGGACCAGACTGAAGTTC

upper sequence: Vv18s0001g10190.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os09g02700.1 (Oryza sativa), 3'ss of exon 8
gtatgcccattaccctaattattgatgataccttagtttgcgttgtattagtagccttttacgtaattttctttttcttctgctctcattattgtcgataccttagtttgcattgtattaggagcctaatttcttttattttattttattttttatg-----gtgctcatgttgttgttt---ccgtttttatttttatggtggctagATGCTGGGCGAAAGTTTGTACCCTCTCGTGGATCAGCTGGAGCATGAGATGGCAGCCAAAGTGACAGGCATGCTTCTGGATATGGGCCAGACTGAGTTTT
                                                                                                                     || ||  ||| ||  ||||   | | | ||||   |   |     ||| || | |||  |  |   || ||| |   || || || || ||||||| || || |  ||||| ||||| || ||||||||||||||||||  ||| || || ||||| |||||||| ||||| |||| |||||||||| |  
--------------------------------------------------------------------------------------------------------------------gtttgggacctcatgcctttctctgtttcttatgcatagcgtgaacgtgttcgtcttgaagcgtgacccatttgttcattgattgttgc-agATGCTTGGTGAGAACTTGTATCCTCTTGTTGATCAGCTGGAGCATGAGCAGGCTGCGAAGGTGACTGGCATGCTGCTGGAGATGGACCAGACTGAGGTGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattttttatggtgctcatgttgttgtttccgtttttatttttatggtggctagATGCTGGGCGAAAGTTTGTACCCTCTCGTGGATCAGCTGGAGCATGAGATGGCAGCCAAAGTGACAGGCATGCTTCTGGATATGGGCCAGACTGAGTTTT
                                       tttttat  CT-rich tract
                                 tttttatttttatggt  TA-rich tract