Sequence
atgc intronic sequence ATGC exonic sequence...aaaattaaataaaaataaaaataaaaataaaaatagaataaagaacaaaagaaaagtattaaaatactgacataccatactttcttgagtttgttcccagATATGGTCTTCACCCATCATGTGGGTAGTGCTACCATGAAAGCAACAAGCAGGAAGCTGAAG
Basic information
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caaaagaaaagtattaaaatactgacataccatactttcttgagtttgttcccagATATGGTCTTCACCCATCATGTGGGTAGTGCTACCATGAAAGCAACAAGCAGGAAGCTGAAG
tactgac putative branch site (score: 1)
tttgttccc putative PPT
aaaagtattaaaatac TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaaattaaataaaaataaaaataaaaataaaaatagaataaagaacaaaagaaaagtattaaaatactgacataccatactttcttgagtttgttcccagATATGGTCTTCACCCATCATGTGGGTAGTGCTACCATGAAAGCAACAAGCAGGAAGCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
-aaattaa
- - - - - -aaaataa
- - - - - - - - - - - - - - - - - -gaataaa
- - - - - - - - - - - - - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -attaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catacca