1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttaaaattcctggtgttatcatcatgaattttaccattttttcttgattttcctcctatttcttgctaatccataatgttgatctacttgtgattgatagCCGATTTGGCACATGGCCTGTTGCCATGCTTGCACAAAGCAAAAACAAGGCAATATTAGAAGGTCCTGTCTGCAATGGAAGCCAAGTAATTGGATGGCAC
species | Vitis vinifera |
transcript | Vv18s0001g08150.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GATGATAATATCTATTCCCTTGAGTTGTTTAAGGGTTTGAGAGAGATCAG CCGATTTGGCACATGGCCTGTTGCCATGCTTGCACAAAGCAAAAACAAGGCEST: gi|71889916|gb|DT038971.1|DT038971
genomic: GATGATAATATCTATTCCCTTGAGTTGTTTAAGGGTTTGAGAGAGATCAGgtattttaag ... tgattgatagCCGATTTGGCACATGGCCTGTTGCCATGCTTGCACAAAGCAAAAACAAGGC
EST: GATGATAATATCTATTCCCTTGAGTTGTTTAAGGGTTTGAGAGAGATCAG CCGATTTGGCACATGGCCTGTTGCCATGCTTGCACAAAGCAAAAACAAGGCEST: gi|71889101|gb|DT038156.1|DT038156
genomic: GATGATAATATCTATTCCCTTGAGTTGTTTAAGGGTTTGAGAGAGATCAGgtattttaag ... tgattgatagCCGATTTGGCACATGGCCTGTTGCCATGCTTGCACAAAGCAAAAACAAGGC
EST: GATGATAATATCTATTCCCTTGAGTTGTTTAAGGGTTTGAGAGAGATCAG CCGATTTGGCACATGGCCTGTTGCCATGCTTGCACAAAGCAAAAACAAGGCEST: gi|351025492|gb|FQ435184.1|FQ435184
genomic: GATGATAATATCTATTCCCTTGAGTTGTTTAAGGGTTTGAGAGAGATCAGgtattttaag ... tgattgatagCCGATTTGGCACATGGCCTGTTGCCATGCTTGCACAAAGCAAAAACAAGGC
EST: GATGATAATATCTACTCCCTTGAGTTGTTTAAGGGTTTGAGAGAGATCAG CCGATTTGGCACATGGCCTGTTGCCATGCTTGCACAAAGCAAAAACAAGGCEST: gi|351038791|gb|FQ464657.1|FQ464657
genomic: GATGATAATATCTATTCCCTTGAGTTGTTTAAGGGTTTGAGAGAGATCAGgtattttaag ... tgattgatagCCGATTTGGCACATGGCCTGTTGCCATGCTTGCACAAAGCAAAAACAAGGC
EST: GATGATAATATCTATTCCCTTGAGTTGTTTAAGGGTTTGAGAGAGATCAG CCGATTTGGCACATGGCCTGTTGCCATGCTTGCACAAAGCAAAAACAAGGC
genomic: GATGATAATATCTATTCCCTTGAGTTGTTTAAGGGTTTGAGAGAGATCAGgtattttaag ... tgattgatagCCGATTTGGCACATGGCCTGTTGCCATGCTTGCACAAAGCAAAAACAAGGC
gattttcctcctatttcttgctaatccataatgttgatctacttgtgattgatagCCGATTTGGCACATGGCCTGTTGCCATGCTTGCACAAAGCAAAAACAAGGCAATATTAGAAGGTCCTGTCTGCAATGGAAGCCAAGTAATTGGATGGCAC
tatttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaaaattcctggtgttatcatcatgaattttaccattttttcttgattttcctcctatttcttgctaatccataatgttgatctacttgtgattgatagCCGATTTGGCACATGGCCTGTTGCCATGCTTGCACAAAGCAAAAACAAGGCAATATTAGAAGGTCCTGTCTGCAATGGAAGCCAAGTAATTGGATGGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - ttcctgg
- - - - - - - - - -catcatg
- - - - - - - - - - - - - - - - -ccatttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctacttg