Sequence
atgc intronic sequence ATGC exonic sequence...tttggtgatggaatcttgtggaaaacattacgaacaggtatagattttgatacattttgtattacatacgaacaacttgatgaaacttagaatatggcagATGTGGAAGAAAAGGTGCAATTCATGCTGAAAATCATTGATGATGATGGAGACTCATTCGCTCAGAGGGCAGAAATGTACTACAGGAAGAGGCCAGAGCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g07610.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA06G10150.1 (Glycine max), 3'ss of exon 1
-----tttggtgatggaatcttgtggaaaacattacgaacaggtatagattttgatacattttgtattacatacgaacaacttgatgaaacttagaatatggcagATGTGGAAGAAAAGGTGCAATTCATGCTGAAAATCATTGATGATGATGGAGACTCATTCGCTCAGAGGGCAGAAATGTACTACAGGAAGAGGCCAGAGCT
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cccacttttcttgtagcataaagtttccagc----tgaataataataaatctgggttggaaaaataactca-attgtcaatgacatgcaaacaaaaatttaacagATATGGAGGATGTAATGGCTGAAACCCTCAACATCATTCATAATGAAGGAGAGTCATTTTCCCAAAGGGCAGAAATGTACTACAGGAAGAGGCCACAGCT
upper sequence: Vv18s0001g07610.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA04G10160.1 (Glycine max), 3'ss of exon 1
-----tttggtgatggaatcttgtggaaaacattacgaacaggtatagattttgatacattttgtattacat-acgaacaacttgatgaaacttagaatatggcagATGTGGAAGAAAAGGTGCAATTCATGCTGAAAATCATTGATGATGATGGAGACTCATTCGCTCAGAGGGCAGAAATGTACTACAGGAAGAGGCCAGAGCT
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cccacttttcttatagcataaagtttccagc----tgaataataataaatcagggttgaaaaaataactcattgtcaatgacatgc--aaacaaaaattttaacagATATGGAAGATGTGATGGCTGAAACCCTCAACATCATTCATAATGAAGGAGAGTCATTTTCCCAAAGGGCAGAAATGTACTACAGGAAGAGGCCACAGCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttgatacattttgtattacatacgaacaacttgatgaaacttagaatatggcagATGTGGAAGAAAAGGTGCAATTCATGCTGAAAATCATTGATGATGATGGAGACTCATTCGCTCAGAGGGCAGAAATGTACTACAGGAAGAGGCCAGAGCT
attttgtattacata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttggtgatggaatcttgtggaaaacattacgaacaggtatagattttgatacattttgtattacatacgaacaacttgatgaaacttagaatatggcagATGTGGAAGAAAAGGTGCAATTCATGCTGAAAATCATTGATGATGATGGAGACTCATTCGCTCAGAGGGCAGAAATGTACTACAGGAAGAGGCCAGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - gtgatgg
- - - - - - - - - -ggaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaacaac